Silurus meridionalis (southern catfish): 124387457
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Entry
124387457 CDS
T08004
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124387457
Membrane trafficking [BR:
smeo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
124387457
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
TPR_8
TPR_10
TPR_7
TPR_NPHP3
ARM_TT21_4th
SH3_1
TPR_MalT
SH3_9
Motif
Other DBs
NCBI-GeneID:
124387457
NCBI-ProteinID:
XP_046707795
LinkDB
All DBs
Position
6:13921392..13936631
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AA seq
1314 aa
AA seq
DB search
MEATLMFSTDQKNMASWRGNSGSQRYGHYRQEVYVKHNSNDLEHKSLEVKGSIKGTSAVS
EDKISTVLPLQLAIAEGPDRLPADKDTQEVLCGKLRVLETDLGKISPLISDLSAHLVSIN
SEERTIFITFKSFEEVWKFTTYHRMGLLSQCLGNLILDQGFWLNSLDQKDSGIEVSIKEE
AINQMYKSFLMQEGSFFGSCTVNQMFDSSTSGSDLYLEKGDIALFEPPFLGSGWTVLSLA
DGSRGTKAWPALEPAIPFHQWFLKSCPEWVLVGSGKTCCNLPFKIAVGICEATEVYDGNG
PDELSFETGDRIIIKGLLVTCFEWFMGKLERTGDTGLVKTSLVKATNSLCESDEIFIKQE
DSKIFNLEQEKIKKEAIAFLKKTCQSNVATVYKLDSTNSTSVRNGPTNCEYISMKRNISN
ILSETRKHPQIEQTQDNVKLQTDESIGSTVSSCKIPHFTVCSEQDPDEYHSLLSFLGSRD
HRPEFQLLYTTYTEFLLLHFQGHSDEEELVEYLGVARETARKKRMPWAQSRICFLLGQLC
AGRSKFSQARVYYEEALSIPRDYFTDMHLLSAIYSNLAFIYLTQKNAEKYLALSERFAAL
LMGVGDYLSGTEDAEVLKFGLKKAVLSLNKPAEARVCFLLAKLYLKLGEGIRAVPFIERL
QILADEIPGTCDKMRSHGFLLLARLYSDYGLLQLAESSAWQACLQVSTSVTDCFCGISLL
LENGQELYGVDIPAQVALCLTRAAALESADVEPSFPHAYALCLSWLFHKQGMSKRAVYYM
CNFIKHSSATTLSQSDANAALIWLAWLYICDWQYHSALDVLDSVLSSLPEHCTTQLEGVI
YNMRGITLRHASDVKQAAENFRAAVDVCEELEDRHNWAIAIANFGFLSLQVNAKRVAEEQ
LIQAIELFSELEDEDHEVNFVVVLLELGKLYVSQGFCEKGKVCYEWALLISILYENSESQ
LQATRHLCQLYSDSCPDEAQCIIYNEHQLNLLQQTGDRTLEAEILQKISQLYLTLGTEKA
NRCALDYTKRSIGIYIDMGRKKKEAHGWLQAGKIYHILKQTELVDLYVPVAQDIALSTGD
TLFILELLETAGDIFFDSTQDREKAVCFYRDRALPIAVKTSSMCCQLRLCNKLAELLLHL
GEYKEAVEYAQTALEISVSMADRLSERVAFHRLATLYHCLNQFELAEHHFLKALSLCPSP
LQFDEEALYYVKVYQTLGDIIFYDLKDPFDAAGYYHLALAAAMDLGNKKSQLELCTRLAT
IYHNFLMDRELSLHFYQRARAFAADLNIRRVNLSADQSFRTTSQYRIKASQEIS
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggaggctactttgatgttttctacggatcagaagaacatggcaagttggagagggaac
tcgggttcccaaagatatggacactaccgacaggaggtgtatgtgaagcataacagcaat
gatctggaacacaaatccttggaagtaaaagggagtataaaagggacctcagcagtttct
gaagacaagatctccacagtgttgccgcttcagctggccatagcagaaggtccggaccgg
cttcctgctgacaaggacacacaggaagttctgtgtgggaagctgcgtgtgctggaaact
gacctcggcaaaatttcacccttgatatctgatttatctgctcatctggtgtccatcaac
agtgaggaaaggaccatatttatcacttttaaatcatttgaggaagtatggaagttcact
acataccacagaatgggcttactgagtcagtgtttggggaaccttattttagaccaagga
ttctggctgaattctttagaccagaaggactcaggaattgaggtctcaattaaagaggag
gcgattaatcagatgtataaaagttttctgatgcaagaaggctccttttttggtagttgc
acagtgaaccagatgtttgacagctccacatcaggcagtgatttgtatcttgagaaaggt
gatattgctctatttgagcctccatttctgggttcgggttggaccgtgctatccctggca
gatggctcaagaggaactaaagcatggccagcattggaacctgccattccatttcatcag
tggtttctgaagtcctgtcctgagtgggttttggtaggcagtgggaaaacatgctgtaat
ctcccgtttaaaattgctgtaggtatctgcgaggcgacagaagtgtatgatggtaatggg
ccagatgaactcagctttgagactggagatcgcattatcatcaagggcctactggtgacc
tgtttcgagtggttcatgggcaagttggagaggaccggtgatacaggacttgtcaaaacc
agcttagtaaaagcaaccaattctctttgtgagtctgatgaaatctttataaaacaagag
gacagcaaaatcttcaacttggaacaagagaagattaaaaaggaagctattgccttttta
aagaaaacctgccaaagcaatgtagctacagtctacaagcttgattcaacaaattcaaca
tcagttcgaaatggccccaccaactgtgaatatataagcatgaaaagaaatatcagcaat
attttgagtgaaacaagaaaacatccacaaatcgagcagacccaagacaatgtaaagctc
caaacagatgagtccataggatccacagtgtcatcctgcaaaatcccacactttactgta
tgttcagagcaggatccagatgaataccattccctcttgtccttcctaggcagccgtgat
caccggcctgagtttcagcttctctatactacctacacagaattcctccttttgcatttc
cagggccacagtgatgaggaggagctggtagaatatttgggtgttgctcgagaaactgca
agaaaaaaacgcatgccatgggcacagagcagaatatgtttcctcttgggacagttgtgc
gcaggaaggtcgaagttctcccaggcacgtgtctattatgaggaagccttaagcatacca
agagactatttcactgacatgcaccttctctcagccatctactctaacctggcctttatc
tatctcacacaaaaaaatgcagagaagtatcttgctctatctgaacgctttgctgcttta
ttgatgggagttggtgactatttatctggcacagaagacgctgaggtgttaaagtttgga
ctaaaaaaggcagttctctccctgaacaaacctgcagaagcccgggtctgtttcctgcta
gccaagttgtatctgaagcttggagaagggataagggctgtacctttcattgaacggtta
cagattttagctgatgagatccctggaacttgtgacaagatgcggagtcatggtttttta
ctcttagcaagactttatagtgactacgggctccttcaactagctgagagctcagcatgg
caggcatgtcttcaggtgtctacctcagtcactgattgtttctgcggcatctctttgctg
ttagagaatggccaagaactgtatggtgttgacatcccagcacaagtagctctatgtttg
actcgagctgctgcgttagaatctgctgacgtggagcccagctttccacatgcctatgcc
ctgtgtttgtcttggctcttccacaagcaaggcatgtctaaaagggcagtttactacatg
tgcaacttcatcaaacattcctctgctacaacactcagccagtctgatgccaatgctgct
cttatctggctggcatggttatatatctgtgactggcagtaccacagtgctctggatgtt
ttggactcggtcctgtcctccctccctgaacattgcacaacccagctggagggggtcatc
tataatatgcgtggcatcactttgagacacgccagtgatgtcaaacaagctgctgagaac
ttccgtgctgcagttgatgtctgtgaggagcttgaagacaggcataactgggccattgca
atagccaactttggtttcttgagtttgcaggtcaatgcgaagagagtagcagaggagcag
cttatccaggcaatagagctgttttcagagctagaggatgaagaccatgaagtgaacttt
gttgttgtgcttttagagcttggaaagctttatgtatcacagggtttttgtgaaaaagga
aaggtctgctatgagtgggccctgctgatttccatcctctatgaaaactcagagagccaa
ttgcaagccactcgtcacctatgccagctatatagtgactcatgtcctgatgaagctcag
tgtatcatctacaatgaacaccagctgaacctgctgcagcagacaggagacagaaccctg
gaggcagaaatattgcagaagatcagccagctgtacctcaccctgggcacagagaaagca
aacagatgtgctctggactacaccaaaagaagtatagggatctacattgacatggggagg
aagaagaaagaggcacacggctggctccaggcaggaaaaatctaccacatcctcaaacag
actgagctggtggatctctatgtgccggtagcgcaagacatcgctttaagcacaggagac
acactatttattctggagctgctggagacagcaggggatatattcttcgacagcacacag
gacagagaaaaagctgtctgcttttatagggaccgagccctcccaattgcagtgaagaca
agcagtatgtgttgtcagctcagattgtgtaataaactagcagagttgctgctacacctg
ggagagtataaagaagctgtggagtatgcacagactgctttagaaatcagcgtcagcatg
gctgaccgtttaagtgagcgtgtggctttccatcggctggctacactctaccactgcctg
aatcagtttgagctggctgagcaccacttcctgaaagccctctcactctgtccctcacca
ctgcagtttgatgaggaagccctgtactatgtcaaggtctatcagacattaggtgacata
atcttctatgatctaaaggacccgtttgatgcagctggttattaccaccttgctctggct
gctgccatggacctgggcaataagaagtctcagcttgagctgtgcactcgtctggctaca
atttaccacaactttctcatggatcgtgaactctccctgcatttctaccagcgtgcccga
gctttcgctgccgatcttaatatccgccgtgtcaacctatcagcagatcagagttttcgc
accacatcccaatatagaatcaaagcctctcaggagatcagctaa
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