Silurus meridionalis (southern catfish): 124387640
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Entry
124387640 CDS
T08004
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124387640
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124387640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124387640
NCBI-ProteinID:
XP_046708049
LinkDB
All DBs
Position
6:complement(13540288..13704697)
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AA seq
693 aa
AA seq
DB search
MRIMKASGATDQPRCAAKMESDSRISGKRHYLRTITGAIPILFSVASVAFCIFLEIQTSD
MKNRMLDLENSDGERLLHPFAQVSIDEFNSMVQERVHEVLSQRSYEHFARVRTARQASPD
CNCPPGPPGKRGRKGHNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIK
RRLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGAPGLPGDPGTSGELGPAGPEG
PPGLQGSPGPSGIPGIDGLKGEVGMPGLDGMPGAKGDRGEQGEKGDMGEEGPKGDVGEKG
DAGSSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGE
RGEPGLPGKGERGETGPFGPKGAQGEPGTPGLKGSKGDTGDKGDFGLTGPTGPAGEKGDQ
GTTEIIDYNGNIQEALQKITTITVTGPPGPPGPVGPQGIKGDQGPPGLPGLDGERGHKGS
KGDMGMPGMSGDKGSVGLPGVPGFNGQKGDKGDAGLPGPQGPSIIGPPGAPGPHGPPGPM
GPHGFPGQKGEAGLPGLKGARGESGHKGDRGPLGLPGASGLDGKPGLRGTDGPAGAPGPA
GPKGDIGEKGATGEPGPRGPYGLPGAPGTPGLDGLPGLRGEKGDMGERGEKGEKGKKGKK
GPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagaattatgaaggcttcgggagccacagatcagcccaggtgcgctgcgaaaatggag
agcgactcgcgcatcagcggaaagcggcattacctcagaaccatcacaggtgcgatcccg
atcctgttctcagtcgcgtctgtcgccttttgcatcttcctggaaattcaaaccagtgac
atgaagaacagaatgctagatttagaaaacagcgatggagagcgtcttttacacccgttc
gctcaggtttccatagatgagtttaactcgatggtgcaggagagagtgcacgaggtcctg
tcacagcgctcctacgaacattttgcacgcgtaaggactgcacgtcaagcctcccctgat
tgcaactgcccaccaggcccaccaggaaagcggggaagaaaaggacacaacggagaaccc
ggaccccctggtccaccaggtccaaaaggtgagaagggagatcaaggagaccagggacct
cggatggtcttccctaagatcaatcatggctttctttctgctgatcagcagctcattaag
cgtcgcctcattaagggtgatcagggtcaagcaggccctccaggacctcctggacctcca
ggtcctcctggtcccaggggaccaccaggagacacagggaaggatggtccgaggggagct
ccagggctaccaggtgacccaggaacctcaggagagcttggtcctgcgggacctgagggc
cctccaggactccagggctcccctgggccctctggcattccaggtattgatggactgaag
ggggaggtgggtatgcccggattagatggaatgcctggtgccaagggtgacagaggagag
caaggtgaaaagggtgacatgggagaagagggcccaaagggtgatgttggtgagaagggt
gatgcagggtcttctgctgctggcattaagggtgaacccggtgaaccaggacgaagtggg
cataagggagaaccaggacttccagggctgcctggacttcccggaataaagggtgaacct
ggttttcttggcccccagggtgagccagggctgccaggactacctggaaccaagggagaa
cgaggagagccaggactgccaggaaagggtgaacgtggggagacaggcccatttggacca
aagggagcacaaggcgagccaggaactccaggcctcaaaggatccaagggggacactgga
gacaaaggagattttggacttacaggacccacaggtccagctggagagaaaggtgaccag
ggaacgactgaaataattgactacaatggaaacatccaagaagcacttcagaagataacc
actattacagtgacgggtccccctgggcctcctggaccagttggaccacagggcattaag
ggtgatcagggccctccaggtctaccaggccttgatggcgagaggggtcacaagggctca
aaaggagacatgggaatgccaggaatgtctggtgataagggatcagtaggattgcctggg
gtaccaggttttaatggtcagaaaggagacaaaggtgatgctggcctgcctggaccacaa
ggaccatctattatagggcctccaggggcacctggtccacatggtcctccgggtccaatg
ggcccacatggattccctggacaaaagggggaagcaggtttgcctggtttaaagggagca
cgcggggagtccgggcataagggtgaccgcggacccctgggcctccctggagcgtctggc
ttggatggcaagcctggattaaggggtacagatggcccagctggtgctcctggtcctgct
ggtcctaaaggcgatataggtgagaaaggtgctacaggtgaacctggaccaagaggccca
tatggattacctggtgctcctgggacaccaggcttggatgggttaccaggcttaagggga
gagaagggtgacatgggggaaagaggagaaaagggggaaaagggaaagaagggcaaaaaa
gggcctaagggagagaaaggagaacagggtgctcctggattagatgcaccctgcccattg
gggccagatggattaccaatgcctggctgctggcaaaagtga
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