Silurus meridionalis (southern catfish): 124387881
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Entry
124387881 CDS
T08004
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124387881 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124387881 (copb2)
Membrane trafficking [BR:
smeo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
124387881 (copb2)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
124387881 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
124387881
NCBI-ProteinID:
XP_046708450
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Position
6:complement(2355734..2364524)
Genome browser
AA seq
934 aa
AA seq
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MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIVTGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESSSVVKIFKNFKE
KKSFKPDFGAEGIHGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMADKVAASQESNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIGYQL
AVEAESEQKWKQLAELAINKCQFGLAQECLHHAQDYGGLLLLATASGNGAMVSKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLSKI
NQKAAESLADPTEYENLFPGLKEAFVAERYLRETCLDKSRPATDYPLVTLNEERNILEEA
SGYEPKGVLPTHTQQSSEPEKATAEAEVSPVTDAAVAAPVASAAPPQPEPAEKDDNITQF
REKTLEELEDDLDNMELDDIDTTDINLDDDFLDD
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggcttgacatcaagcgcaagctcacggctcggtcggaccgcgtcaaaagc
gtcgacctccatcccaccgagccatggatgctggccagcctgtacaacggcagcgtgtgc
gtctggaaccacgaaacacaaactttggtgaagaccttcgaagtgtgcgacctgccagtg
agagctgcgaagtttgtcgccaggaagaactgggtcataaccggagcagacgacatgcag
atccgcgttttcaactacaacacgctcgagcgcgtgcacatgttcgaggcgcattccgat
tacatccgatgcatcgccgtgcacccaacccagccctacatcctcaccagcagtgacgat
atgctgattaagctgtgggactgggagaagaaatggtcgtgcagtcaggtgttcgaaggc
cacacgcactacgtcatgcagatcgtcatcaaccccaaggacaacaaccagttcgcgagc
gcctcgctggacaggaccatcaaggtatggcagcttggttcctcgtctcccaacttcacc
ctggagggccacgagaagggagtgaactgcatcgattattacagcggcggcgataagccg
tatcttatctccggcgccgacgaccggctggtgaaaatctgggactaccagaataagacg
tgcgtgcagacgctggagggtcacgcccagaacgtgtcgtgcgtcagcttccaccccgag
ctgccgatcatcgtgacgggatccgaggacggcacggtgcgcatctggcactcgagcacc
tatcggctggaaagcactctgaactacggcatggagcgcgtctggtgcgtgtgcggcctc
cgcggttccaacaacgtcgcactcggttacgacgagggcagcatcattattaagcttggt
cgcgaggagcccgccatgtccatggacaccaacgggaagattatctgggccaagcattct
gaggtccagcaggccaacctgaaggccatgggcgacacggaaattaaagacggagagagg
ctgccactggccgtcaaagacatgggcagctgtgagatctacccccagactattcagcac
aaccctaatggaaggttcgtggtggtttgcggcgacggagagtacatcatctatacagcc
atggctctgaggaacaagagcttcggctcagcccaggagtttgtttgggcccacgattct
tcagagtacgctattcgagagagcagcagtgtggtgaaaatcttcaagaattttaaggag
aagaagtccttcaaacctgattttggggccgaaggcatccacggtggcttcttgctgggc
gtgaggtccgtcaacggcttggctttttacgactgggagaacaccgagctgatacgccgc
atcgaaattcaaccaaaacatatcttctggtccgactctggagagctcgtgtgcatcgcc
acagaggagtccttctttatcttgcgctacatggcagacaaagtggctgcatcccaggag
tccaacgaaggggtcaccgaagacggcatcgaggacgctttcgaggtgcaaggtgagatc
caggagattgtaaagacaggtctgtgggtgggagactgcttcatctacaccagctcggtc
aaccggctgaactattttgtcggaggcgagatcgtcaccatcgctcacctggataggacc
atgtacttgctgggctacatcccgaaagatgaccgcctgtacctcggagacaaggagctg
aacatcgtcagctactcgctgctggtgtcggtgttggagtaccagacagccgtcatgcgg
cgcgacttctcaatggccgacaaggtgctcccgacgattccgaaagagcagaggaccagg
gtggcccacttcctggagaaacagggttttaaacagcaagcgctggccgtctctaccgac
ccagagcacaggtttgaacttgctctccaactaggggagctgaaaattggctaccagcta
gcagttgaagcagagtctgagcagaaatggaagcagttggcagagttggctatcaataag
tgccagtttggcttggcacaggagtgccttcatcacgcccaggactacggaggcctgctg
ctgttggctacagcctctggcaacggcgcgatggtgagcaaactggctgagggcgcagag
cgagacggcaagaacaacgttgccttcatgacctacttcctgcaggggaaattggaccag
tgtctggaactcctgattagaaccaatcgcctgcctgaggccgccttccttgctcgcacc
tacttgcccagccaagtgtccagagtggtaaagctatggagagagagcctttcgaaaatc
aaccagaaagcggcagaatccctggccgaccccaccgaatacgagaacttgttccctggg
ctgaaggaggctttcgtggctgagcggtacctccgagaaacctgcctggacaagagcagg
cctgccaccgactacccactggtcacgctcaacgaggagcggaacatactagaagaagcc
agcggttacgaacctaaaggcgttcttcccactcatacacagcagagctccgaacctgag
aaggctacagcagaagcagaagtttcgccagtcacggatgctgctgtagccgctcccgtt
gctagtgcggctcctccgcagcccgaacctgcagaaaaagacgacaatattacacagttc
agagaaaagaccctggaggaactggaggacgacctggacaacatggagctggacgacatc
gacactacagacatcaacctggacgacgacttcttagacgactga
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