Silurus meridionalis (southern catfish): 124388400
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Entry
124388400 CDS
T08004
Symbol
thrab
Name
(RefSeq) thyroid hormone receptor alpha
KO
K05547
thyroid hormone receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04080
Neuroactive ligand-receptor interaction
smeo04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124388400 (thrab)
04081 Hormone signaling
124388400 (thrab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124388400 (thrab)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124388400 (thrab)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124388400 (thrab)
Nuclear receptors [BR:
smeo03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
124388400 (thrab)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
124388400
NCBI-ProteinID:
XP_046708926
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Position
7:complement(24481438..24637715)
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AA seq
409 aa
AA seq
DB search
MEHMPKEQDLNQSEKEEKRWLNGPKRKRKNSQCSVKSMSGYIPSYLEKDEPCVVCGDKAT
GYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMA
MDLVLDEAKRVAKRRLIEENREKRKKEEMVKTLQNRPEPTGTEWELIRLVTEAHRHTNAQ
GSHWKQKRKFLPEDIGQSPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSE
LPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFD
LGKCLAQFNLDDTEVALLQAVLLMSSDRSGLTCMEKIEKCQETYLLAFEHYINYRKHNIP
HFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaacacatgcccaaggagcaggatcttaaccaatcagagaaagaagagaaacggtgg
ctcaatggcccgaagaggaagaggaagaatagtcagtgttcggtgaagagcatgtcaggg
tacatcccgagttatctagagaaggatgagccgtgtgtggtgtgtggagacaaagccact
ggctaccactaccgctgcataacctgcgagggctgcaagggtttcttccggcgcaccatc
cagaagaacctccacccggcgtattcctgcaagtacgatggctgctgcatcatcgacaag
atcacccgcaaccagtgccagctgtgccgcttcaagaagtgcattgccgtgggcatggcc
atggacctggttcttgacgaggcgaagcgagtggccaagcggcgtctcatcgaggagaac
cgggagaagaggaagaaggaggagatggtgaagaccctgcagaacaggcccgagcccacg
gggacagagtgggagctgatccgccttgtgacagaggctcatcgccacaccaacgcccag
ggctcacactggaaacagaaacgcaagttcctgcctgaagacatcggccagtcacctgta
gccccgacgtcagacggggacaaagtcgacctggaggcctttagtgagtttacgaagatc
atcacgccagccatcacacgcgtcgtcgactttgccaaaaaactgcccatgttttcagag
ctgccttgtgaggaccagatcatcctgctgaagggctgctgtatggagatcatgtctctg
agggcggcggtgaggtacgaccccgagagcgagactctgacgctgagcggagagatggcc
gtgaagagggagcagttgaagaacggcggcctgggcgtggtctccgatgccatcttcgac
ctggggaagtgcctcgcacagtttaacctggacgacacagaggtggcgctgctgcaggcc
gtgctgctcatgagctcagaccgctcaggtttgacgtgcatggagaagatcgagaagtgc
caggagacgtacctgctggcgttcgagcactacatcaactatcgcaagcacaacattccc
cacttctggcccaagctgctgatgaaggtgacggacctgcgcatgatcggggcatgccac
gccagccggttcctgcacatgaaggtggagtgtcccacggagctgttccctcctctcttc
ctcgaggtcttcgaggaccaggaagtgtga
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