Silurus meridionalis (southern catfish): 124388437
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Entry
124388437 CDS
T08004
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124388437 (trub1)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
124388437 (trub1)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
124388437 (trub1)
Prokaryotic type
124388437 (trub1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
DUF5892
Motif
Other DBs
NCBI-GeneID:
124388437
NCBI-ProteinID:
XP_046709003
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All DBs
Position
7:complement(13310643..13315318)
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AA seq
302 aa
AA seq
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MAAVNSGALTKLHSLNGIFAIYKKTGPTSADVLNTLKQKLLKEAGVDKPNPRKRKKQAFK
LGHGGTLDSAASGVLVVGIGEGTKMLTSMLSGSKKYTAVGELGKATDTFDATGSVVQEKN
YDHITREVFEENLKQFTGEIMQVPPLYSALKKDGKRLSTLLKEGHEVEAKPARPVTVYSL
SLQDFNPPLFTLEIECGGGFYVRSLVDDLGKALSSCAHVQELTRTKQGQFTLREHVLREE
RWTFQDISEVLQPCLKTAAVHNKSKKNKNQDVATQLSSECAAKDLHHSIPDNVAENQKHS
SD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtaaacagcggtgctctaactaaattacattcgttaaacggaatattcgct
atatataagaaaacgggacccacgtctgcagatgtgttaaacacgctgaaacaaaagctg
ttaaaagaggctggtgtagataaaccaaacccccgaaaacggaagaagcaggctttcaaa
ctgggtcatggtgggactctggacagtgctgcttctggtgttctggtggttgggattggt
gaggggacgaagatgctcacctctatgctttctggttcaaagaaatacacagctgtcgga
gagctgggcaaagcgactgacacctttgatgctacaggaagtgttgttcaggagaaaaac
tacgatcacataacaagagaagtttttgaagagaatctgaagcagttcactggtgaaatc
atgcaggtccccccactgtactccgcactgaaaaaagatggcaagcgcctttctaccctg
ttgaaggaaggccatgaagtggaggctaagcctgcacgtccagttacagtttacagcctc
tcattacaagactttaatcccccacttttcactttggaaattgagtgtggtggaggcttt
tatgtcagaagcctggttgatgatctgggaaaagcgctgtcttcctgcgctcatgtgcag
gagctgacccggacaaagcagggccagttcactctaagggaacatgtgttaagggaggag
cgctggaccttccaggacatttctgaggtattacagccctgtttaaagactgcagctgtg
cacaacaaaagcaaaaaaaacaaaaatcaagacgtggccacccagctcagctctgaatgt
gctgctaaagatctccatcacagcatacctgataatgttgctgaaaaccaaaaacacagc
agtgattaa
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