Silurus meridionalis (southern catfish): 124388456
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Entry
124388456 CDS
T08004
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03020
RNA polymerase
smeo04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124388456 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
124388456 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124388456 (polr3a)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124388456 (polr3a)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
124388456 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
124388456
NCBI-ProteinID:
XP_046709030
LinkDB
All DBs
Position
7:27555956..27581769
Genome browser
AA seq
1390 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLPYGVLDHRM
GTSEKDRGCETCGKNLADCLGHYGYVDLELPCFHVGYFKATIGILQMVCKTCSRIMLSKE
ERQQFLDYLRRPGLPYLQKRGLKKKISDKCRKRNVCLHCGAFNGPVKKCGLLKIIHEKYK
SNKKVVDPIVSDFLQSFDTAIEHNKEVEGLVSRAQENLNPLVVLNLFRRIPSEDVPLLLM
NPEAGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANMELMRKLVKNGPDVHPGANF
IQQRHMQMKRFLKYGNREKMAQELKLGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGGYLLTLKDTFFDRAKACQIIASILVGKDEKLKIALPRPAIMKPVRLWTGKQI
FSLILKPSVICPVKANLRTKGKQYSGRGEDLCHNDSFVVIQNSELLCGSMDKGTLGSGSK
NNIFYILLRDWGQMEAADAMSRLARVAPTYLSNRGFSIGIGDVTPGQGLLKAKQELLDAG
YKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVFTCADEPALSKNELVLTADAIMKRNDFTC
CRDTFLQEIKKFINSMAEKIKKTRDKYGINDNGSTEPKVLYQLDRITPTQLEKFLETCRD
KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI
STPIITAHLDIEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
RLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENSKSSMYYVLQSLKQELPKIV
VQGIPEVSRAVIHIDEQSSRQKLKLLVEGDNLRAVMATHGVNGNRTTSNNTYEVEKTLGI
EAARMTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLAS
FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHRADREPSPPRRTLLFD
TNDFHIPLTS
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagcagttcagagagacagatgtggccaaaaagataagccacatctgtttt
gggatgaagtcggcggagcagatgcgtcagcaggctcacatccaggtggtcagtaagaac
ctgtacagtcaggacacgtctcacacaccactgccttatggagtactggaccaccgcatg
gggacgagtgagaaggaccgtggttgtgagacgtgtgggaagaacctggcggattgtttg
ggccattacggttatgtagatctggagcttccctgcttccacgtcggatactttaaagcc
accatcggcatcctgcagatggtctgtaagacatgttctcggatcatgttgagtaaagag
gagcgacagcagttcctggattatctgaggcgtcccggtttgccatatctacagaaacgt
ggcctgaagaagaaaatctctgataagtgcagaaagaggaacgtgtgtctgcactgcgga
gcctttaacggtccggtgaagaaatgtggcctgttgaagatcatccatgagaagtataaa
agcaataagaaggtggtggatcccatcgtctctgatttcctgcagtccttcgacactgca
atcgaacacaacaaagaggtggagggactggtctctcgtgctcaggaaaacctgaaccct
ctggtggtgctgaatcttttcaggagaattcccagtgaggatgttcccctgctgttgatg
aatccggaggcggggaaacctgctgacctcatcctgacccgcctcctggtcccacccctc
tgtatccgcccctcagtcgtcagtgacctcaaatcagggactaacgaggacgacctcact
atgaagctgactgagatcatcttcctcaacgacgtcatcaagaagcaccgcatgtccgga
gctaaaacccagatgattatggaggactgggacttcctgcagcttcagtgtgctctgtac
atcaacagtgaactgtcagggattccgctcaacatggcaccaaagaagtggactagagga
ttcgtacagaggctgaagggcaaacagggccgtttccgtggtaacctgagtggaaagcga
gtggatttttctggaagaaccgtcatctctcccgaccccaacctgaggattgacgaggtc
gcggttcctgttcacgtcgccaaaatcctcacctaccccgagaaggtaaataaagccaac
atggagctgatgaggaagctggtgaagaacggacctgatgttcatccaggagcaaacttt
atccagcagagacacatgcagatgaagaggttcctgaagtatgggaacagagagaagatg
gcccaggagctgaagctgggggacgtggtggagagacacatgattgatggagacatcgtc
ctgtttaaccgacaaccatcactacacaaactcagcatcatggcacacatcgcacgtgtg
aaaccccaccggacgtttcgctttaatgagtgtgtgtgtacaccgtataacgctgacttt
gatggagatgagatgaacctccacctgccgcagaccgaggaggccaaagctgaagctctc
gtactcatggggaccaaagcgaacctggtgaccccaaggaacggtgaacctctaatcgct
gctattcaggactttctcacaggtggttatctgcttactctgaaggacacgttctttgat
cgagccaaagcctgtcagatcatcgcctccattctggtgggaaaagacgagaaactcaaa
attgccctccctcgccctgctattatgaagcctgtgcggttgtggacaggaaagcagatc
tttagtttgatcctgaagcccagtgtgatctgcccagtgaaggccaacctgagaaccaaa
ggcaaacagtacagtgggagaggagaggacctgtgtcacaacgactccttcgtggtgatc
cagaacagtgagttactttgtggcagtatggataaaggaactctgggttcaggatcaaag
aacaatatattctacatcctgctgagagactggggtcagatggaggcagcagacgccatg
agccgccttgcccgagtcgcacctacatacctctctaaccgtgggttctccattgggatc
ggggacgtgacccctggtcagggtctgctgaaggccaaacaggaactgctagatgctgga
tacaagaagtgtgacgagtacatcgaggccctgaatacaggaaaactacagcaacagccg
ggctgtacagccgaggagacgctggaggcactgatccttaaagagttgtcagtaattaga
gaccatgctggcagtgcctgtctgagagagctggacaagagtaacagtccactcattatg
gctctgtgtgggtcaaaaggctcctttattaacatctctcagatgattgcatgtgtgggt
cagcaggccatcagtggctcccgagttccagacggctttgagaatcgatcactgccacac
tttgagaaacactcaaagcttcctgcagctaaaggctttgtagcagacagtttttactcc
ggtttgacccccactgagttctttttccacacaatggctggccgtgagggtttagtggac
acggctgtgaaaacagcagagaccggatacatgcagaggcgcttggttaagtctttggag
gatctgtgctctcagtatgacctcactgtgcgcagctccactggtgacatcatccaattc
atctatggaggagacggactggacccagccgccatggagggcaaagatgaacctctcgag
ttcaaaagagtgctggataacatccgggcggtcttcacctgtgctgatgaacctgctctc
agtaagaatgagctggtgctgaccgccgacgccattatgaagaggaacgactttacctgc
tgcagagatacattcttacaggaaataaaaaaatttataaacagcatggcggaaaagatc
aagaagaccagagacaagtatggcataaacgataatggatccacagagcctaaagttttg
taccagctggacagaatcacacccacacagctggagaagtttctagaaacctgcagggac
aagtacatgagagctcagatggagcctggctcggctgtaggtgctctctgtgctcagagt
attggagaacctggaacccagatgaccctgaagacgttccactttgcaggtgtggcctcc
atgaacatcacgctgggggtaccacggatcaaagaaatcatcaacgcctccaagaacatc
agcacaccgatcatcactgctcacctcgacattgaggacgatgcagacttcgctcgactg
gtgaagggcaggatcgagaaaaccctgctgggagagatatcagagtacatagaggaggtg
tttctgcctgatgactgtttcatcctcgtcaaactctcactcgagaggatccgccttctc
agactggaggtgaatgcagagacagtcaggtactctatctgtatgagtaagctgagagtg
aagcctggtgatattgcggttcatggtgaagcggtggtgtgtgtgtctcctcgagagaac
agcaaaagctccatgtactacgtcctgcagtcactcaagcaggagttacccaagattgtt
gtacagggtattcccgaggtttcccgcgctgtgatccacatcgatgaacaaagcagccgg
cagaaattgaaactgttggtggagggagacaacctgcgcgctgtcatggcaacacacggt
gtcaacggcaaccgcaccacatccaacaacacgtatgaggtggagaagacgttggggatt
gaggccgcgaggatgaccatcattaatgagatccagtacaccatggtgaatcacggcatg
agcatcgaccggcgtcacgtcatgctgctcgctgacctcatgtcctacaagggagagatc
ctaggcatcactcggtttggcctggcgaagatgaaggagagcgtcctgatgctggcttca
ttcgagaaaaccgcagatcatctgtttgacgctgcgtacttcggacagaaggattcagtg
tgtggtgtatcagagtgtattataatgggaatccccatgaacattggaactggtctgttt
aaacttctacatcgagctgaccgagaacccagtcccccacggagaaccctactgttcgac
actaacgacttccatatacccctcacctcctaa
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