Silurus meridionalis (southern catfish): 124388458
Help
Entry
124388458 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124388458
04020 Calcium signaling pathway
124388458
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124388458
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124388458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
GRP
Motif
Other DBs
NCBI-GeneID:
124388458
NCBI-ProteinID:
XP_046709039
LinkDB
All DBs
Position
1:complement(4143350..4309961)
Genome browser
AA seq
2225 aa
AA seq
DB search
MMTKEEHPSGAGVSSPGAGSSPEAVPSPGWETAIDEEVDLERHLEQEEAGSAVQEVGDNA
SSQLSAVVVPYPELAPVVFFCLKQTTFPRSWCIRLVDSPWFERVSMMVILFNCVTLGMYQ
PCENIDCSSNRCQILQAFDAIIYIFFAVEMVVKMVALGIFGRRCYLGDTWNRLDFFIVMA
GVVEYSLDLQNINFTAIRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVF
FIFGIIGVQLWAGLLRNRCYPDKNFTLSTGMALPAPYYSPDEEDERPFICSLPQDNGIMS
CNDVPARREGGRECCLDVEDALHLQTLGLAADPILNASMSAVPGLCVNWNRYYTQCRTGY
SNPHKGAINFDNIGYAWIVIFQVITLEGWVEIMYYVMDAHSFYNFIYFILLIIVGSFFMI
NLCLVVIATQFSETKQREHQLMQEQRARCLSSSTLGSLAEPGDCYEELFQLTCHMLRKAR
RRSAALFRALRPHLRQATPTQSQTNINGGERSQRQHQGSHCRHHTRPDCAPAEGADVFPP
PVSEDCPGCIALSLRDGAGPEGXSANQEAEEGAPEDTDEQGDQSEEQKDERVCKSRCKEL
WIEMRIKLWGIVESKYFNRGIMIAILINTISMGIEHHEQPEELTNVLEICNIVFTSMFAL
EMILKLTAFGCFNYLHNPYNIFDGIIVIISVCEIVGQSDGGLSVLRTFRLLRVLKLVRFM
PALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTDAGDTVPDRKNFD
SLLWAIVTVFQILTQEDWNVVLYNGMASTSPLAALYFVALMTFGNYVLFNLLVAILVEGF
QAEGDANRSYSDDDGSSSNYDGSERHKDSLQLSDPKLCALTPNGHLEMNTIGGGRINLEE
ESRKSSVTSLDKSSLEQRSFSLRHGRSSLYRHWGRPHPQSAWSRRSSWNSMGRATRGLAV
GGSLRVRGPHSHPAERESLLSPQPQLSHHPPLLSRRYSLRRDRRALSLELPEQLQLPGPS
LQHPLLPRKKSECGEQHHDCNGKAPMRQRALLSEVYPQLNARKDKPHLEEETDYSLCFRI
QKMIEVYRPDWCETREDWSVYLFSPENKFRLTCQKIIAHKLFDYVVLAFIFLNCITVALE
RPKIHQGSLERVFLTISNYIFTAIFVAEMTVKVVSMGLYLGDRAYLRSSWNILDGFLVFV
SLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLITSLKPIGNIVLI
CCAFFIIFGILGVQLFKGKFYYCVGLDVKNITNKSDCLLAKYKWVHHKYNFDNLGQALMS
LFVLASKDGWVNIMYHGLDAVGIDQQPLTNNNPWMLLYFISFLLIVSFFVLNMFVGVVVE
NFHKCRQHQEVEEAKRREEKRLRRMEKKRRKAQKLPYYAGYGHVRLMIHTLCTSHYLDLF
ITLIICINVITMSLEHYDQPKSLETALKYCNYFFSSTFVVEATLKLIAFGFRRFFKDRWN
QLDLAIVLLSVMGITLEEIEINASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTV
VQALPQVGNLGLLFMLLFFIYAALGVELFGELVCNADYPCEGMSRHATFENFGMAFLTLF
QVSTGDNWNGIMKDTLRECPPGDTYSCNGSLQFISPMYFVSFVLTAQFVLINVVVAVLMK
HLDDSNKEAQEEAEMDAEIELELAQGGLCCLGGLAAAAGPGIGMGTGGGGVGGGGGGVGG
DRPSFECGGRQAGMVGAHVHASQSGYTPLSGGYESHNHRKLYSPAQENLWLDSVSLLIKD
SLEGEMQMIDNLSGSVFHHYSSPAVCKGCRCQPTEIRLAEVEQASLMSEQLSDKSSSPAL
PDDLSLDDHSVYQLAVRDIKEERGSSTSQSLEELQATPAECSMSYSKIRAFSMGSESGGI
LPNSGLQNQNESASHYHVLSCNPADGERGSSSSRRDRRTPSPLFHLPADFFHPATAVPKG
SLASGTVRVGRLGSRLTSPASWASLRSPGANCRVVGLQVQPPSHSESSLATGKSEVSLQT
MLEEGINFSVPPHRDMSLPHPLLCPLPDETLPSLDLSQRLHSDSTSFTLQATRGRQRSQS
GCDGSPNSIEPLGGDTSIGEGSSQAFNSEHLSETMSSLSLSSLLMPGSLVPSLAKKCNST
GSLEQRNVMAQNKNGQHLHSTDQHQNLLNLWTEERDKGDGGEKGIADLGVKSSSQTMDTC
SRKNR
NT seq
6678 nt
NT seq
+upstream
nt +downstream
nt
atgatgactaaggaggagcacccctcaggagcgggcgtgtcctccccaggagctggctcc
agccctgaggcggttccatctcctggatgggagacagcgatcgatgaagaggtcgatctg
gagcggcatttggaacaagaagaggcggggtcagcagtccaggaagtgggagacaatgca
agcagtcagctaagtgctgtggtagttccatatcctgaactggcacccgttgttttcttc
tgcttgaaacagacaacgttcccaaggagctggtgcatccgcttggtggacagcccatgg
ttcgaaagagtgagtatgatggtgatcttattcaactgtgtcaccctgggaatgtaccag
ccatgcgagaacatcgactgctcctcgaatcgctgtcagatcctgcaggcgttcgatgct
attatttatatcttctttgccgtggagatggtggtcaagatggtggctctcggcatcttc
ggccgccgatgttaccttggcgacacgtggaacagactggacttcttcatcgtcatggct
ggggttgtggaatactctttggacctacaaaacatcaattttacggccatcaggaccgtc
agagtcttgcgacctctcaaagccatcaacagagtcccaagtatgaggatcttggtaaac
ctacttctagacaccctacccatgctgggcaatgtgctcctcctctgcttcttcgttttc
ttcatcttcggcatcatcggcgtgcagctgtgggcggggcttctgcgcaaccgctgctat
cctgataagaatttcacgctatcaacgggaatggccctgcctgctccttactactccccc
gatgaggaagatgagcggcccttcatttgctcgctgccccaggataacggaatcatgtcg
tgcaacgatgtcccggcacggcgtgagggaggccgggagtgttgtttagatgtagaggat
gctcttcacctacagactctgggcctggcagctgatcccattcttaatgcaagcatgagt
gctgtaccaggactctgtgtaaactggaaccgctattacacccagtgcaggacaggctac
tccaaccctcacaagggtgcgattaacttcgacaacatcggctacgcgtggatcgtgatc
tttcaggtcattaccctggagggctgggtggagatcatgtattatgttatggacgcgcac
tctttttacaacttcatctacttcatcttgctgatcatagtgggctctttcttcatgatt
aatctgtgcctggtggtcatagctactcagttctcggagacgaaacagcgtgaacaccag
ctgatgcaggagcagcgtgcccgctgtctgtcctccagcacattgggatcactggcagag
ccaggagactgctacgaggagctctttcagctcacctgtcacatgctgcgtaaagcccgt
cgccgctccgctgccttgttcagggctctgaggccgcacctacgccaggccacgcctact
cagtcgcaaactaacatcaatggcggagaaaggagtcagaggcagcaccagggatcccac
tgtcgccatcacacaaggcctgactgtgctcctgctgaaggtgctgatgtttttccacca
cccgtctctgaggactgtcctggctgcattgccctgtctctcagagatggtgcagggcct
gaaggcnacagcgccaatcaggaggcagaggagggtgcgccagaggacacagatgagcag
ggtgaccaatcagaagagcagaaggatgagagggtgtgtaagagtagatgtaaagagctg
tggatagagatgaggattaaactgtggggaattgtcgagagcaaatacttcaaccgaggc
atcatgattgccattctgatcaatacaatcagcatgggcatcgaacatcatgagcagccc
gaggagctgacaaacgtcctggagatctgcaacatcgtcttcaccagcatgtttgccctg
gagatgatcctgaagctgactgccttcggttgtttcaactacctgcacaatccgtacaac
atatttgatgggatcatcgttatcatcagtgtgtgtgagatcgtcggacagtccgatggc
ggcctgagcgtgttgaggacgttcaggctgctccgtgtgttaaagctggtgcgcttcatg
cccgctctgcgccgccagcttgtcgtcctgatgaaaaccatggacaacgtggccacgttt
tgcatgctactcatgctcttcatcttcatcttcagtatcttgggaatgcacatatttggc
tgtaagttcagcctgaagacagatgctggcgacacagttcctgacaggaagaactttgac
tctttgctgtgggccatagtgacggtttttcagatcctgactcaggaggactggaacgtg
gtgttgtataatggcatggcctccacctctcctctggcagctctctatttcgtggctctt
atgacgtttggaaactatgtgctttttaacctacttgttgctattctggtagagggattt
caggcagagggtgatgctaatcgctcatattcagatgatgacggatcgtcctccaactat
gatggaagtgagagacacaaggattcgctccagctctcagatcctaaactttgtgctttg
actcccaatgggcacctggagatgaacaccataggaggaggaaggatcaatttggaagag
gaatctcgtaagagcagtgtcactagtctggacaagagcagtttggagcaacgatctttc
tcactgcgtcatggtcgtagttccctgtaccgccattgggggcgcccccaccctcagtcg
gcatggagccgccgctctagctggaacagcatgggccgtgcaacccgaggcctggcagtt
ggtgggagcctaagggtccgaggtccccactcccacccagctgaacgggagtccctgctc
tccccacagccccaactctcacatcacccacctctcctttctcgacgttactctctccgc
cgtgatcggcgtgccctctcacttgagctgcccgagcaactccagctccctgggccctca
ctgcagcacccacttctgccccggaaaaaaagtgagtgtggggagcagcaccatgactgt
aacgggaaagcgccgatgcgccagagagcactgctcagtgaggtctatccccagctcaat
gcccgaaaggacaaaccacaccttgaagaggaaacggactatagcctatgttttaggatc
cagaagatgattgaggtatatcgccctgactggtgtgagacaagagaagactggtctgtc
tacttgttttcccccgagaacaagttcaggttaacttgccagaagatcattgctcataaa
ctgtttgactatgtagtgttggcctttatcttcctcaactgcatcacagtggcccttgaa
agacctaagattcatcagggcagtctggagcgagtctttctcaccatctccaactatatc
ttcactgctatcttcgtagctgagatgacggtcaaggtggtttccatgggtttgtatttg
ggtgatcgtgcctacctgcgcagcagttggaacattctggatggttttcttgtctttgtg
tctctaattgacattgtcgtatcaatggccggaggggctaagatccttggtgtgctccgt
gtcctacggctgctcagaaccctgcgacccctcagggtgatcagccgggcccccggacta
aagctggtggtggagaccctcatcacatctctcaagcccatagggaacattgtgctcatc
tgctgcgcgttcttcatcatcttcggcatcctcggcgtgcagctcttcaaaggaaagttc
tattattgcgttggcctggatgtcaagaacatcaccaataagtccgactgtctgttggca
aaatacaaatgggttcatcataagtataattttgacaacctggggcaggctttgatgtct
ctgtttgttttggcctctaaagacggctgggttaatataatgtaccatggccttgatgca
gtgggaatagaccaacagccattgaccaacaacaacccatggatgctgctgtacttcatc
tcgttcctcctaatcgtcagcttctttgtgctgaacatgtttgtcggcgtggtggtggag
aactttcacaagtgccggcagcaccaggaggtcgaggaggccaaaagaagggaggaaaag
aggctcaggcgaatggagaagaagagacggaaagctcagaagttgccgtactacgccggg
tacggccatgtccgcttgatgatccacacgttgtgcaccagccactacctggacctgttc
atcaccctcatcatttgtatcaacgtcatcaccatgtcgctcgagcactacgaccagcca
aagtctctcgaaaccgctctgaagtactgcaattacttcttcagctccacctttgtggtc
gaggccacactcaagctcattgctttcggcttccgtcgctttttcaaagacaggtggaat
caactggaccttgctattgtgcttttgtctgtgatgggcatcacactagaggagatcgag
attaacgcctcacttcctatcaaccccaccattattcggatcatgcgggtgttgaggatc
gcccgtgtgctgaaactgttgaagatggccaccgggatgcgagctttgctagacaccgtt
gttcaggctttacctcaggtgggaaatctgggtttgctgtttatgttgctgttcttcatc
tacgcagctctgggtgtcgagctgttcggggaactggtgtgcaatgctgactacccgtgt
gaggggatgagtcgtcatgccacctttgagaacttcggcatggcctttctgacactcttc
caggtatcgactggtgacaattggaacggaatcatgaaggacactttacgagaatgccca
ccaggcgacacttactcctgcaatggcagtctgcagttcatctcccccatgtattttgtg
agttttgtgctgacggcccagtttgtcctcatcaacgtagtcgttgctgttctaatgaag
cacctagacgactcgaacaaagaggcgcaggaggaggcggagatggatgctgaaatcgag
ctcgaactagcacagggaggactctgctgcctgggtggactggcagctgctgccgggcct
ggcatcgggatgggaactggaggtggtggagttggtggaggaggtggtggagttggagga
gacaggccaagttttgagtgtggaggcagacaggcaggcatggtaggggctcacgtgcat
gccagccaaagtgggtacacacctctgagtggaggatatgaatcacacaaccacaggaag
ctctactcacctgcacaggagaacctgtggctggatagtgtttctctgctgattaaagac
tccctagagggcgagatgcagatgattgataacctgtcaggatctgtgtttcatcactac
tcgtcccctgcggtctgcaaaggctgcaggtgccagcctacagagatacgattggctgag
gtggagcaggcctccctgatgtcagaacagctctcagacaagtcgtcgtctccagcactt
ccggatgacctcagtcttgatgaccacagtgtgtaccaactagctgtcagagacatcaag
gaagaaagagggagcagtacctctcagagtttagaagaacttcaggctacaccggctgaa
tgcagcatgtcctattctaagattcgagctttcagcatgggaagcgagagcgggggaatt
cttcctaattcaggccttcagaatcagaatgaatcagcatcccattatcatgtgctatct
tgtaatccagcagatggtgagcgaggcagcagtagcagcagaagggacaggaggacaccc
tctcctctctttcatctcccggcagacttcttccacccagccacagctgtgcccaaagga
agcctggcctcaggtacagtgcgggtagggcgactcggctccaggctaacttcgccggct
tcatgggcatcacttcggtcacctggtgccaactgcagagtcgtaggcttacaggtgcag
ccaccttcccacagcgagtcatcattagccacaggaaagtctgaggtcagcctgcagaca
atgttagaggaaggcatcaacttcagcgtacctcctcacagagacatgtctttaccacac
cctctgctttgccccctaccagatgaaaccctcccttccttggatctcagccagaggttg
cactctgactcaaccagttttactctccaggccaccaggggccgccagagaagccagagc
ggctgcgatggcagccctaactccattgaacctttgggcggggacaccagcatcggtgaa
ggatcgagtcaagcatttaacagtgaacatttatcagagaccatgagcagcctttcccta
agttcactgctcatgcctggctcactggtgccatcactggcgaaaaagtgcaacagcacc
gggagcttagaacaaagaaatgttatggcacaaaacaaaaatggacagcaccttcacagc
acagaccaacatcaaaaccttttgaacctgtggacagaagaaagagacaaaggggatggt
ggggagaaagggattgcagatttaggggtcaaaagctccagtcaaacaatggacacctgc
tctcggaagaacagatga
DBGET
integrated database retrieval system
