Silurus meridionalis (southern catfish): 124388460
Help
Entry
124388460 CDS
T08004
Symbol
vclb
Name
(RefSeq) vinculin b isoform X1
KO
K05700
vinculin
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04520
Adherens junction
smeo04810
Regulation of actin cytoskeleton
smeo04820
Cytoskeleton in muscle cells
smeo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124388460 (vclb)
04520 Adherens junction
124388460 (vclb)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124388460 (vclb)
04810 Regulation of actin cytoskeleton
124388460 (vclb)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
124388460 (vclb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124388460 (vclb)
04147 Exosome [BR:
smeo04147
]
124388460 (vclb)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
124388460 (vclb)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124388460 (vclb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
Talin_R4
Harpin
Mob_Pre
Motif
Other DBs
NCBI-GeneID:
124388460
NCBI-ProteinID:
XP_046709048
LinkDB
All DBs
Position
7:complement(27243986..27283086)
Genome browser
AA seq
1068 aa
AA seq
DB search
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLCAPVAAVQAAVSNLVRVGKE
TVQTTEDAVMKRDMPPAFIKVENACTKLVQAAQMLKADPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVESMEDLITYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISGIKIFVTTKTAKSAGMDEAVKNRNFTMEKMSAE
INEIIRVLQLTSWDEDAWASKKDTETMKRALALIDSKMAQAKNWLKDPNAQPGGSGEQAV
RQILDEAGKVGELCVGNERKEILDTAKTLGHLTDQVADLRARGSGTSPVAIQKAQQVAQG
LDMLSGKVANVADKLEAMTNAKHTLAKKAEAAQAWLADPASGPEGEEHVKAVLAEAQNIA
ALCEDPREYDDILRNVNEIAALTGKLSQLRKAGKGNTPEARALAKQIATALQNLQSKTNR
AVANTRPAKAALHLEGKMEQAQRWIENPTMEDGGVGQAAIRGLVAEGRRLANVLPGSQRA
ELMGKCEQVEQLMGQLAELSARGHADTPQAHTLAQQLQHALKDLKDKMQEAMTQEVSDIF
SDTTTPIKLLAVAATAPPGTPHREEVFEERAAGFESHAARLGATAEKAAAVGTANRSTVE
GIHAAVKSARDITPQVVSAARILLKNPGNQAAHEHFEMMKNQWIDNVEKMTTLVDEAIDT
KSLLDASEEAIKQDLEKCHVAMTNHQPQMLVAGATSIARRANRIVLVAKREVENSEEPKF
RETLREAANELSASISPMVMGAKSVANNIQDPNLQKCFMDSGYRILESVAKVRDAFQPQE
PDFPPPPPPDLQQLSINDEGAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQRAGEMVSEPM
MVAARQLHDEARKWSSKGNDIIGAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKAS
DEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQ
ATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLHWVRKTPWYQ
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgttccacacaaagaccatagagagcatcctggagcccgtggcccagcagatc
tctcacctggtcatcatgcacgaggagggcgaggtggacgggaaggcgatcccggatctg
tgcgctccggtggcggcggtgcaggcggcagtcagtaacctggtccgggtggggaaggaa
actgtgcagactactgaggatgccgtcatgaaaagagacatgcctcctgcattcataaaa
gtggagaacgcatgcactaagctggtccaggcggctcagatgctgaaggcagacccgtac
tcagtcccggctcgggattatctcatcgatggctcacgtggcattttatcaggaacctcc
gacctgctgctcacctttgacgaggctgaggtgcgtaaaatcatccgtgtgtgtaagggc
attctggaatatctgactgtcgctgaagtggtggagagcatggaggatctgatcacctac
accaagaacctgggaccaggaatgacgaagatggcgaagatgattgacgagcgacagcag
gagctgactcaccaggagcaccgtgtcatgctcgtcaactccatgaacacggtgaaggag
ctgctgcctgtcctcatctcaggaataaagatctttgtgacgactaagaccgctaagagt
gcagggatggacgaggcagtgaagaacaggaatttcaccatggagaagatgagcgcagag
atcaacgagatcatccgagtgctccagctcacatcctgggatgaagacgcctgggccagc
aagaaggacacggagaccatgaagcgagctctggctctcatcgactcgaaaatggcccag
gcgaagaactggctcaaggaccccaacgcacagcctggaggaagtggggaacaggctgtg
aggcagatcttggatgaagcagggaaagtgggtgaactgtgtgtaggtaatgaacggaaa
gagattctggacacggccaagaccctgggacaccttactgaccaagtcgcagacctacgg
gccaggggttcaggaacgagtcccgtggccattcagaaagcgcagcaggttgctcagggg
ttggacatgctgtctgggaaagttgcgaacgttgcagacaaactggaggccatgaccaac
gctaaacacacactcgccaagaaagcagaggcggcacaggcctggctagctgaccctgcc
tccggtcctgagggagaggagcacgtgaaggcagttctcgcagaggctcagaacattgcg
gctctgtgtgaggatccacgtgaatacgacgacatcctgcgcaacgtcaacgaaatcgcc
gctctcaccgggaaactctcgcaactacgcaaagcgggtaagggtaatacccctgaggcc
cgtgccctggctaaacagatcgccacagctctgcaaaacctgcagtcgaagacgaaccgc
gccgtagcgaacactcggccggcgaaagccgctcttcacctggaggggaagatggagcag
gcgcagcgctggatagaaaaccccaccatggaggacggaggcgtggggcaggctgccatc
cgcgggctggttgccgaggggcgtcgactcgccaacgtgttacctggatcccagagggcg
gagcttatgggaaagtgcgagcaggtggagcagctgatgggacaactggctgaactgagt
gctcggggacacgctgatacaccacaagcacacacactcgctcagcagctccaacacgcc
ctgaaggatcttaaagataaaatgcaggaggccatgacacaggaagtgtctgatatcttc
agcgacaccacgactccaataaagcttctggccgtggctgctaccgctcctccgggaact
ccacaccgagaggaggtgtttgaggagcgagcagcaggttttgagagtcatgcggcgaga
ctcggggccacggctgagaaagcagctgctgtgggtacggccaatcgcagcacggtggag
ggaatccacgctgccgtcaagtcagccagagatatcacacctcaggtggtatctgctgcc
cgcatcctgctgaagaacccggggaaccaggccgcccacgagcacttcgagatgatgaag
aaccagtggatcgacaatgttgagaaaatgaccactctggtggatgaagcgatagacact
aagtctttgttggacgcatcagaggaggccattaaacaagacctggagaagtgtcatgtg
gccatgaccaatcaccagcctcagatgctggttgccggggcgacgagcatcgcccgcagg
gccaaccgtatcgtgctagtggcgaagcgggaagtggaaaactctgaggagcccaagttc
agagagacgctgcgggaggcggccaatgagctgagcgcttccatatcacccatggtgatg
ggagccaagagtgtggccaataacatacaggacccaaatctacagaaatgcttcatggac
tctggttacaggattctggagtcagtagctaaagtgcgcgacgcctttcagccccaggag
cctgatttccctcctcctcctcctccagacctccagcagctcagcattaatgatgaaggt
gcccccccaaagccccccctgcctgagggtgaagtcccgcccccaaggcccccgccccct
gaggagaaagacgaagagtttcctgagcagagagccggagagatggtcagcgagcccatg
atggtggcggcacggcagctccatgacgaggcgcgcaagtggtccagcaagggtaatgac
atcatcggcgcggcgaagcgtatggccctgctgatggcggaaatgtcacgactggtgcga
ggaggaagcggaaacaagcgtgcgctcatccagtgtgccaaagatatcgctaaggcttca
gacgaggtcacgcggcttgctaaggaggtcgctaagcagtgcacagataaacgcatccga
accaacctgctgcaggtgtgtgagcgtatccccaccatcagcactcagctgaagattctc
tccacagtcaaggccaccatgttgggacgtaccaacatcagcgaagaggagtctgagcag
gcaacagagatgttggtccacaatgctcagaatctgatgcagtcagtgaaggagacggtg
cgcgaggccgaggcggcgtccatcaagatccgcactgacgctggctttacactgcactgg
gtccgaaagaccccctggtaccagtga
DBGET
integrated database retrieval system
