Silurus meridionalis (southern catfish): 124388589
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Entry
124388589 CDS
T08004
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124388589 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124388589 (dhx8)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124388589 (dhx8)
Spliceosome [BR:
smeo03041
]
Complex C
Other components
Step II factors
124388589 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
PhoH
TsaE
ABC_tran
Sigma54_activ_2
Flavi_DEAD
Cas3-like_C_2
Presenilin
Motif
Other DBs
NCBI-GeneID:
124388589
NCBI-ProteinID:
XP_046709324
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All DBs
Position
7:complement(12071922..12082729)
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AA seq
1205 aa
AA seq
DB search
MADLGEDELKKLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKNPTFESFKSVLMKN
GAEFTDSLVSNLLRLIQTMRPPTKASTSKGSEPVDNQKCEKDRLKELFPALCRADNPNTR
NMLDEDDVKVANDAMKELEMFMPSVKATESKSSKRSEASSSKKSRRSRSRSRSRDRDRDR
DRDRKRRHRSRSRSRSRSPDRERRKRKTRWHSRSRSKSPGRVDRADREKGSDRWRDKHVD
RPPPEEPAVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK
GQRVKVKVLSFTGSKTSLSMKDVEQETGEDLNPNRRRNVGGEGQEESAMRNPDRPTNLNL
GHAPEVEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDE
DLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQRE
AEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQ
LSIIEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTARGKIGC
TQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPDTVIKYMTDGMLLRECLIDPD
LGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIF
TIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYE
RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVV
DPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTT
NVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTR
LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKF
HQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRGQDIRKQMLGIMDRHKLDVVS
CGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELV
LTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISR
AFRRR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctcggggaagatgagctcaaaaagctcgaatatttgtctttagtgtcgaaa
gtgtgcactgagctcgacaaccacttgggaatcagcgacaaggatcttgcggagtttgtc
atcagccttgcagaaaagaacccaacatttgaaagttttaagtcagtcttgatgaaaaat
ggagcagagtttacagactcacttgttagcaatttactccgtctcattcagaccatgcga
ccccccactaaagcatccacaagtaaaggcagtgagcctgtggacaatcaaaagtgtgaa
aaagaccggttaaaggagctgtttcctgccttgtgcagagccgataatcctaacaccaga
aacatgctggatgaagatgatgtgaaggttgcaaatgatgctatgaaggagctggagatg
ttcatgcccagtgtcaaggccacagagtctaagagcagcaagagatctgaagccagcagc
agcaagaagagccggagaagtaggagtcgcagccgaagtcgggacagggaccgggacagg
gaccgggaccggaagagacgccatcgttctcgctcgcgttccagatctcgctctcctgac
agggaaaggagaaagcgcaagactcgctggcattcccgcagcaggtccaagagtccaggc
cgagtggacagagctgaccgagagaaaggatcagaccgctggagggataaacatgtggac
cggccgcccccagaggagcctgctgtaggtgacatctacaatggcaaagtgaccagcatc
atgcagttcggttgttttgtgcagcttgaagggttgaggaaacgttgggaaggcctggtg
catatctctgaacttagaagagaaggaagagtggcaaatgtggcagatgtggtcagcaaa
ggtcagagggtgaaagtcaaggtgttgtccttcacaggctcgaagaccagtctgagcatg
aaggatgttgaacaggaaacaggtgaagacttaaatccaaacagacgaaggaatgttggt
ggagagggtcaggaggagtcggctatgaggaatcccgatagacccaccaaccttaacctg
ggtcatgctcctgaggtggaggatgacacactagagcgcaagagactcaccaagatttct
gatcctgaaaagtgggagattaaacaaatgattgctgccaatgtgctttccaaggaagaa
tttccagactttgatgaggagactgggatccttcctaaagtagacgatgaagaggatgag
gacctggagattgaactggtggaagaggagccaccttttctaagaggacacacaaaacag
agcatggatatgagccctgtgaaaatagtgaagaaccctgatggctcgctgtctcaggca
gccatgatgcagagtgctctggctaaagagagacgggaagtgaaacaggctcagcgtgag
gctgagatggactctattcctatgggcctcaacaaacattgggttgaccccctaccggat
gtcgacggcaggcagatcgccgcaaacatgcggggcattggcatgatgcccaacgacatc
ccagagtggaagaagcacgcttttggtgggaacaaggcctcctacggaaagaagactcag
ctgtccatcattgagcagcgagagagtcttccaatttacaagctcaaagagcagctcatt
caggctgttcatgataaccagatccttattgtgattggagagacgggatcagggaagacc
acacagatcactcagtatctggctgaggctggatacacagcgcgtgggaagattggctgc
acacagcccagaagagtggctgccatgtctgtggccaagagagtatctgaagaatatggt
tgttgtttgggtcaggaggtgggctacactatccgttttgaggactgcacaagtccagac
acagtcatcaagtacatgacagatggtatgctgctgagagagtgtctgattgatcctgat
ctgggccagtatgctatcattatgctggacgaggctcacgagcggaccatccacacagat
gtgctttttggcttgctcaagaagacggtacagaaacgaacagacatgaagctgattgtg
acatctgctacactggacgcggttaagttctcacaatatttctacgaggcgcccattttc
actatcccaggtcgtacttatccagtcgaggttctttacactaaagagcctgagacagat
tacctggatgccagtctgatcacggtcatgcagatccaccttactgagccaccaggtgat
attctggtattcttgactggtcaagaagagatcgacacagcctgtgagatcctgtatgag
cgaatgaaatcactaggccctgacgttccagagctgatcatcttacccgtgtactctgca
ctgcccagtgagatgcagaccaggatctttgacccggctccacctggcagcagaaaggtg
gtcattgcaacaaacatcgctgaaacttctcttaccattgatggaatctattatgtggta
gatccagggtttgttaagcagaaggtgtacaattcaaaaaccggcattgaccagcttgtg
gtgacccccatctctcaggctcaggctaagcagcgagcaggccgtgcagggaggacgggg
cctggcaagtgctacagactgtacacagaacgtgcttatagagatgaaatgctcaccacc
aatgtccctgagatccagagaactaacctggccagcactgtgctctcccttaaggctatg
ggcattaatgacctgttatcatttgacttcatggacgctcctccgatggagacactgatc
acagcaatggaacagctgtacacattaggagctctggacgatgaaggactactcactcgt
ctgggacgcaggatggctgagtttcctctagagcccatgctatgtaagatgctcatcatg
tctgtccacctgggctgcagtgaagagatgctaaccatagtgtccatgctctcagtgcag
aatgtcttctataggccaaaggacaaacaggctctagctgaccagaagaaggctaaattc
caccagcctgagggagaccacctcactttactggctgtgtacaactcttggaagaacaac
aagttctccaatccctggtgctacgagaacttcatccaggctcgctctttacggcgtgga
caggatatccgcaaacagatgttgggcatcatggaccggcacaaattggatgtggtttca
tgtggtaaggccacagtgcgtgtgcaaaaggcaatctgcagtggattcttccgtaacgct
gctaagaaagaccctcaggaaggctacaggacgcttatagaccagcaggtggtttacatt
cacccctcgagtgccctattcaaccgacagcctgagtgggtggtataccatgaactggtg
ctgaccaccaaagagtacatgagagaggtgacgacaatcgacccacgttggctggtggag
ttcgctccggccttcttcaaagtgtccgacccgactcgcctcagcaagcagaagaaacag
cagcggcttgagcctctctataaccgttatgaggagcccaacgcctggagaatttccaga
gctttccgcagacgctag
DBGET
integrated database retrieval system
