Silurus meridionalis (southern catfish): 124388656
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Entry
124388656 CDS
T08004
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04518
Integrin signaling
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124388656 (col1a1b)
04518 Integrin signaling
124388656 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124388656 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124388656 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124388656 (col1a1b)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124388656 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
124388656
NCBI-ProteinID:
XP_046709509
LinkDB
All DBs
Position
7:complement(9331449..9350658)
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AA seq
1445 aa
AA seq
DB search
MFSFVDIRLGLLLATAVLVARGQGQDDSEYNSCTLEGQSYNDKDVWKPEPCRICVCDSGT
VMCDEVICEDIPDCANPEIPDGECCPICIDGTETPTNGGFGPKGEPGPKGEPGFAGYPGN
DGIPGEPGLPGPPGPPGPSGFGGYNLPQLSYASEKSSGPPVPGPPGPPGPRGPPGSAGSP
GPQGFTGPPGEPGEPGSPGPMGPRGPTGPHGKNGDDGEAGKAGRPGERGAAGAQGARGFP
GTPGLPGIKGHRGFNGLDGAKGDSGPAGPKGEPGSPGENGIAGVMGPRGLPGERGRPGPS
GPAGARGNDGNSGPSGPPGSTGPSGPPGFPGGAGAKGETGPAGGRGSEGPQGARGEPGNP
GPAGAAGPSGSPGSDGSPGGKGSPGPAGITGAPGFPGSRGPAGPAGPVGAVGPKGLTGDT
GPQGPKGEPGVKGEPGPAGPQGLVGPAGDEGKRGARGEPGGTGPAGPPGARGAPGSRGFP
GADGGVGPKGAPGELGPNGPAGAQGATGESGRPGEPGLPGSKGVTGAPGSPGPEGKSGPS
GPAGQDGASGPAGPAGSRGSPGVMGFPGPKGADGESGKPGERGIEGPVGSVGAPGKDGDV
GAPGPSGPAGPAGEKGEQGPAGSPGFQGLPGTQGATGETGKAGEQGLPGEVGVPGPSGPR
GDRGLPGERGAPGPAGPTGPRGSPGAAGNDGARGDAGAAGGPGGVGPAGPQGMPGERGSS
GLPGTRGERGDGGPKGPDGAPGKDGLRGLTGALGAPGPSGTSGEKGEPGPVGPAGATGPR
GGHGERGEPGPPGPAGFAGPPGAAGQPGAKGETGDSGPKGDAGPPGSVGPIGGPGPQGPA
GATGSKGARGGAGPPGATGFPGAAGRVGPPGPAGIGGPPGPVGPSGKEGQRGARGEKGTP
GRPGEIGAAGAPGPPGERGSPGADGPAGPAGAPGPQGINGGGGLSGSSGQRGERGMPGSP
GPSGEPGKQGPTGAPGERGPPGPMGPPGLSGSTGEAGREGNPGHDGAPGRDGAPGPKGDR
GESGHHGAPGAPGLPGPPGPVGPSGKPGDRGEAGPAGPAGISGPAGARGAMGPAGPRGDK
GEAGETGERGMKGHRGFSGMSGLPGPAGHPGDAGPAGPTGPAGPRGPAGSTGVHGKDGMN
GIPGPVGPPGPRGRSGEMGAAGAPGLPGPPGPPGPAGIGEPFPIMPQPEKAGDPYGGYRA
DEASVRDHDAEVDTTLKTISQKIESIRSPEGTKTNPARMCRDIRMCHPEWKSGSYWVDPN
QGSPLDAIKVFCNMETGETCINPIRASIPLKNWFISKNIREKKHVWFGESMPDGFQFQYG
SEDTDSEDVSIQMTFMRLMANKASQNITYHCKNSIAYMDEASGNLKKALLLQGSNDAEIR
AEGNSRSTYRVSEDGCTSHTGTWGKTVIEYKTTKTSRLPIIDIAPMDIGAPNQEFGIEVG
PVCFL
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgttgctcgcgaccgccgtgctcgtagcg
agaggacagggccaggatgacagcgaatacaacagctgcacattagaaggccagtcgtac
aatgacaaggacgtgtggaaacctgagccatgccggatttgcgtgtgtgacagtggaact
gtcatgtgcgacgaggtgatctgcgaggacatcccagactgcgccaacccagaaatcccc
gatggcgaatgctgccctatttgcatcgacggcaccgaaacaccaaccaatgggggtttt
ggacccaagggtgaacctggacctaagggtgaaccgggttttgctggatatcccggtaac
gatggcatccctggagagcctggacttccaggtccccctggaccccctggaccctctggt
ttcggtggatacaacctgccccagctgtcttatgctagtgagaaatccagcggcccacct
gttcctggaccaccaggcccacctggacctcgtggacctcctggatctgctggttctcct
ggtcctcaaggattcactggccctccaggtgaacctggtgagcctggctctcctggtcca
atgggtcctcgtggtcccactggtcctcatggaaagaacggagatgatggtgaggctggc
aaagctggtcgccccggtgagcgtggagctgctggtgctcagggagctcgcggtttccct
ggaacccctggacttcctggcatcaagggacacagaggttttaatggtctagatggagct
aagggagattctggccctgctggacctaagggtgagcctggttcacctggtgagaatggc
attgctggtgttatgggccctcgtggtttgcctggtgagagaggccgtcctggaccttct
ggacctgctggtgctcgtggtaatgatggcaactctggcccctctggacctcctggatcc
actggtccatctggtcctcctggattccccggtggtgctggagctaagggagagactggc
cctgctggaggccgtggatctgagggacctcagggagcccgtggtgagcctggtaaccct
ggacctgctggagctgctggaccatcaggttctcctggtagcgatggcagccctggtggc
aagggatctcctggtcctgctggtattactggtgctcctggtttccccggtagtcgtgga
cctgctggacctgctggacctgttggtgctgttggaccaaagggtcttactggtgatact
ggtccccagggacccaaaggagagcctggtgttaagggagagcctggacctgctggacct
cagggtcttgttggacctgctggtgatgagggaaagaggggagctcgtggtgagcctggt
ggtactggaccagctggacctcctggagctcgtggtgcccctggcagccgtggtttccct
ggtgctgatggtggagtaggccccaagggtgcccctggtgagcttggccccaacggacct
gctggagctcagggagccactggagaatctggccgacctggagagcctggacttcctggc
tccaagggtgtgactggtgcccctggatcccctgggcctgagggcaaatctggaccttct
ggtcccgctggtcaagatggtgcttctggacctgcaggccctgctggatctcgtggttcc
cctggtgtgatgggattccctggacctaagggagctgatggtgagtctggtaaacctggc
gagagaggcattgaaggtcccgttggttctgtgggtgctcctggtaaagatggtgatgtt
ggtgctcctggaccttctggccctgctggacctgctggagagaaaggagaacaaggacct
gctggatcacctggattccagggtcttcctggaacacagggtgctactggtgagactgga
aaggctggtgaacagggtttgcctggtgaggttggtgttcctggaccttctggccccaga
ggtgatagaggtcttcctggcgagcgtggtgccccaggccctgcaggtcccactggtcct
cgtggctctcctggtgctgctggtaacgatggtgctaggggagatgctggtgctgctgga
ggtcctggtggtgtgggtcctgctggtccacagggaatgccaggagagcgtggctcaagt
ggacttcctggcacaagaggagaaagaggtgatgggggacctaaaggccctgatggtgct
cctggtaaggatggtctgcgtggtttgactggtgcccttggtgcccctggaccttctggt
acttcaggagaaaagggtgaacctggacctgtaggacctgctggagctactggacctcgt
ggtggacatggtgagcgtggagagcccggacctcctggacctgctggatttgccggacct
cctggtgcagctggccagcctggagccaagggtgagactggtgacagtggacctaaaggt
gatgctggacctcctggatctgttggacctattggtggtccaggtcctcagggccctgct
ggtgctactggatccaaaggtgctcgtggtggtgctggacctcctggtgctactggtttc
cctggtgctgctggtagagttggaccacccggccctgctggtattggtggaccccctggc
cctgttggaccaagtggcaaagagggacagcgtggtgcacgtggtgagaagggaacacct
ggtcgcccaggtgagattggtgctgctggagccccaggacctcccggagagagaggttct
cccggtgctgatggacctgctggtcctgctggtgcccctggacctcagggtataaatgga
ggtggtggtttgtctggtagctctggacaaagaggagagagaggcatgccaggatctcct
ggaccatctggagagccaggaaaacagggacctactggtgcacctggtgagcgtggacct
cctggcccaatgggaccccctggtctgagtggtagtactggtgaggctggccgtgagggt
aaccctggtcatgatggtgcccctggtcgtgatggtgctcctggccccaagggagaccgt
ggtgagtctggacatcatggagctccaggagctcctggactccctggacctcctggacct
gttggtccatctggcaagcctggagatcgtggagaggctggtcctgctggccccgctggc
atttcaggtcctgctggtgcacgtggtgctatgggtcccgctggtcctcgtggagacaag
ggcgaggctggagagactggagaaagaggcatgaagggacatcgtggattctctggcatg
tctggactgcctggacctgctggccaccctggtgatgccggacctgctggacctactggc
cccgctggacctcgtggacctgctggttctactggtgtccatggtaaggatggcatgaac
ggtattcctggacctgttggacctcctggacctcgtggacgcagtggagagatgggagct
gccggtgcccctggtcttcccggaccaccaggtccccctggacctgcaggtattggtgag
ccattccccattatgccccagcctgagaaggcaggtgatccatatggtggttacagggct
gatgaagctagtgtgcgtgaccatgatgctgaggtggacaccacactcaagaccatcagc
cagaagatcgaaagcatccgcagccccgagggaaccaagacaaacccagctcgcatgtgc
cgtgacatcaggatgtgccatcccgagtggaagagtggttcctactgggtggatcccaac
cagggatctcctctggatgccatcaaggtcttctgcaacatggagactggtgagacctgc
atcaaccctattcgtgcaagcattcctctgaagaactggttcatcagcaagaacatccgt
gagaagaagcacgtctggttcggagagtccatgcctgatggcttccagttccagtatggc
agcgaggacaccgactctgaagatgtgagcatccagatgaccttcatgcgcctgatggcc
aacaaggcatcccagaacatcacataccactgcaagaatagcatcgcctacatggatgaa
gcctcaggcaacctgaagaaggctttgctcctgcagggatccaacgatgccgagatcagg
gccgagggcaacagtcgctccacgtatagagtcagcgaggatggctgcacgtcgcacact
ggcacttggggcaagacagtcatcgaatacaagacaacgaaaacatctcgtcttcccatc
attgacattgctcctatggacattggtgctcccaatcaggaattcggcatagaagttggc
ccagtctgcttcttgtaa
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integrated database retrieval system
