Silurus meridionalis (southern catfish): 124388693
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Entry
124388693 CDS
T08004
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124388693 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
124388693 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124388693 (lsm5)
03041 Spliceosome [BR:
smeo03041
]
124388693 (lsm5)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124388693 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
124388693 (lsm5)
Spliceosome [BR:
smeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124388693 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
124388693
NCBI-ProteinID:
XP_046709577
UniProt:
A0A8T0BHD1
LinkDB
All DBs
Position
7:1449961..1452893
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AA seq
91 aa
AA seq
DB search
MAATPVSTPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaacaccggtttcaaccccttcacagttgctacctttggagttggtggataaa
tgtatcggctcccggattcacatagtcatgaagaacgataaagagatcgtggggaccttg
ctggggttcgacgattttgtcaacatggtgctcgaggacgtcactgagtttgagatcacg
cccgagggacgacggataacgaaactggatcagatcctcctcaacgggaacaacatcacc
atgttgatccctggaggtgaaggaccggaggtgtga
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integrated database retrieval system
