Silurus meridionalis (southern catfish): 124388763
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Entry
124388763 CDS
T08004
Symbol
mms19
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
KO
K15075
DNA repair/transcription protein MET18/MMS19
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124388763 (mms19)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124388763 (mms19)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124388763 (mms19)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
124388763 (mms19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS19_C
MMS19_N
TOR1L1_N
Sec7-like_HUS
PDS5
DD_K
HEAT_2
Anticodon_1
Motif
Other DBs
NCBI-GeneID:
124388763
NCBI-ProteinID:
XP_046709730
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All DBs
Position
7:4394791..4427389
Genome browser
AA seq
1026 aa
AA seq
DB search
MAADVASLVSLLEEFVSGQADSSATTIATGVKTGQFSILQLVEALGLSLTSSQTQTRGRG
VQLLSEVLQESYSGLSESEVKVLVAFYENRLKDHYAITPHVLHGLAALAKCSALPPGAAV
SILKALFQDVHVQSLMLKERSYVYNILISLMDSREKELKGLGPDFVFGFVQAMDGERDPR
NLLLVFQIARNIIHRGYDLNQFTEELFEVTSCYFPVDFTPPANNPHGITQEDLILALRAV
LTGTARFAEFLVPLLIEKLDSEVQDAKVDSLKTLAACGPVYGHKELAEFLPGLWSSIRRE
VFQTASEKVESAGLAALGAITSCLARTVLTSNSGDALQMFLELVLKDCQHHLCEPDLKLV
WPSAKLLQAASGASYRSSLIVTAAVLPALFEQYNSRTQCAHRRTLLEVLQGFIQPTVSSR
PAEREDNVLLPFQKSLCNVVFSALAESNAALQVTAMKVLATLGKQSGMLTEADMEIAVEH
LTRLVVEENDAQVSSAVTDCAGSLARLHPSFFVTRMVPRLKDEIFTEPMAEEDASPARIR
SRAAARERSVTALASVSLRISLVQESVPVLLQVLAAAHKGSSGFSAEEVIWACQGLWRIA
EETHHTVEIADFFHATVIPRLMGLSLHAAVHSQKCSSPLTEEAVLSALVPVISTACAALQ
PAPATRMAAQAVSLFLDGDVSWLPENAYPSNIQLLESQSDGWSQSQLVCLLMACVCSLSQ
QVDIPDLDRLLVQLEELIFTCTHPFSYTSAAKCFAGLINKRAAGPALDAVLEKTLSRISA
TLECESSAQRVQAFTLLIWVTKALLLRYHPLSPVLTDKLFGLLNDDQLGSRAADGFSLLM
SDSPDVLNRSCHADVRIMYRQRFFTENSAKLVQGFNSAELEKRSVFLKALSHLVNNLPRQ
VQLTELPALLPLLLEALTCPDDAVQLSTLSCFQPLIMEPPPALSTQLEALFTRLLALTTS
PAMKVRMAALRCVHALSRLPSHMVLPFRPRVLKSLARPLDDKKRLVRKEAVAARSEWFLL
GSPGGR
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgacgtcgcaagtctagtcagtctgttggaggaattcgtctccggacaagcc
gacagctcggctacgacgatcgcgacaggtgtcaagacgggacagttctcaatccttcag
ctggtcgaggcactagggttaagtttaacaagttctcagactcagacccgtggccgaggg
gtgcagctgctctccgaggtcctgcaggaatcctacagcggcctttctgagagtgaagtg
aaggtcctggtagcgttctacgagaacaggctgaaggatcactatgcaatcacgccgcac
gtcctccacggactcgcagctctggcgaagtgctcagcactgcctccgggtgcagcagta
tctattctaaaagccctcttccaggatgttcatgttcagtccttgatgttgaaagagcgc
tcatatgtctataacatcctcatcagcctcatggattcgagggaaaaggagctgaagggt
ttgggtccggactttgtgttcggatttgtgcaggccatggatggagaacgagatcctcgc
aacctcctgctggttttccagatcgccagaaacatcatccacaggggttatgacctcaac
cagtttacagaggagctctttgaagtcacgtcctgctacttcccggtcgacttcacacct
ccagccaacaaccctcacggcatcacgcaggaggacctcatcctggctctccgggccgtt
ctaacaggcacagcgcgatttgcagagttcctggtgccattacttatcgagaaacttgac
tcggaagtccaggatgccaaggtggactcgctgaaaacgctggcggcttgtggtcctgta
tacggacacaaagagctggcggagttcctcccaggcctttggtcctccatacgccgagag
gttttccagacagcgagcgagaaggtcgagtcagcaggtctcgctgctctcggggccatc
acatcctgtctggctcgcacggtcctcacatcaaactctggagatgctctgcagatgttc
ctggagctcgtcctcaaagactgtcagcaccatctgtgtgagccggacctgaagctggtg
tggcccagcgccaagctgcttcaggctgcaagcggcgcctcctacaggtcgagcctcatt
gtgactgcagccgtgctgcctgcactgtttgagcagtacaactccagaactcagtgtgct
catcggcgcactctgttggaggtgttgcagggcttcatccagcccacagtgagcagccgg
cctgcagaacgagaggacaacgtgctgctccccttccaaaagtctctctgcaacgtggtg
ttttccgctttggcagagtctaatgcggcgcttcaggtcactgctatgaaggtcctcgcc
acactgggcaagcagtctggcatgttaacggaggcggacatggaaatagcagtggagcac
ctgacgaggcttgttgtagaagagaacgacgcccaagtcagttccgcggtaaccgactgc
gcgggatctctggctcgtctccatccgtccttcttcgttacccgaatggttcctcggctg
aaggatgaaatattcacagagcccatggccgaagaagatgcttctccggctcggatccga
agcagagcggcggcacgggagcgcagcgtgacggccctcgcctccgtctccctgcggata
agtctggtgcaggagagcgtgccggtactactgcaggttttagctgctgcacacaaaggt
agcagcgggttctcggccgaggaggtgatttgggcgtgtcaaggtctgtggaggatcgcg
gaggaaacgcatcacacggtggaaattgccgactttttccacgccacagtcattccgcgg
ttaatgggcctgtccctgcacgcagctgtgcacagtcagaagtgctctagtcccctcact
gaagaggccgtgctctctgctctagttcctgtcataagcactgcttgtgcagcattacag
ccagcacctgctactcgaatggcagctcaggccgtgtcccttttcttagacggagacgtc
tcttggctgcccgaaaatgcctacccatccaatattcagctcctcgagagccagtcagac
ggttggtcccagtcacagctggtgtgtttgctcatggcctgtgtgtgttccctttcacaa
caggtggacattcctgacctggacagacttttggtgcagttggaggagctgatcttcaca
tgtactcacccgttctcctacacgtccgcggcgaaatgtttcgctggcctgatcaacaag
agagcagcaggcccagccctggatgctgttctggagaagacgttgagcagaataagtgcg
acgttagaatgcgaatcatctgcacagcgagttcaagccttcaccttattaatctgggtg
accaaggctttgcttctgcgctaccatcctctgtcaccagtcctgactgataagctcttc
ggccttctaaatgatgaccagttaggttctcgggcggcagacggtttctcactgctcatg
agcgattctccggacgtgctaaaccgtagctgtcacgccgacgtacgcatcatgtaccgc
cagcgattctttaccgagaactctgcaaagctcgtacaaggcttcaacagcgcagagcta
gagaagagatcagtgtttctaaaggccctgtctcacctggtcaacaatctgcccagacaa
gtgcaactcactgagcttcctgctttgctgcccctgcttttggaagcactgacgtgtcct
gatgatgcagtgcagctctcaactctctcctgctttcagccactgataatggagcctcca
ccggctctcagcacgcagctggaggctctgttcacccgcctgctcgctctcaccaccagc
cctgctatgaaagtgaggatggctgccctgcgctgcgtccacgccctctcccgcctgcct
agtcacatggtgctgcctttccgtcccagggtgctgaaaagtctcgctcggccgctggac
gacaagaagagactggtgaggaaggaggcggtggcggcacgcagcgaatggtttttgtta
gggagtccaggaggaagatga
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