Silurus meridionalis (southern catfish): 124388856
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Entry
124388856 CDS
T08004
Symbol
gspt1
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A
KO
K03267
peptide chain release factor subunit 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124388856 (gspt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124388856 (gspt1)
03012 Translation factors [BR:
smeo03012
]
124388856 (gspt1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124388856 (gspt1)
Translation factors [BR:
smeo03012
]
Eukaryotic type
Release factors
124388856 (gspt1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
124388856
NCBI-ProteinID:
XP_046709893
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All DBs
Position
7:complement(11397255..11405780)
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AA seq
563 aa
AA seq
DB search
MDQRDTAPESWEEDDVEAQADTELQSAFTGLNVNAPEFVPSFAPRASPNSAGSQGPDAVA
NMEISEPVAAVENGETDTGTAESWEEKGESDDVEAGGGTMQESGPLREEAQDEMMEEDEE
MPAPKLPPPLPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEK
NRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQA
DLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDHTVNWSLDRYEE
CKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKESSEMCPWYTGLPFIPHLDSLPNFNR
SSDGPIRLPIVDKYRDMGTVVLGKLESGSISKAQQLIMMPNRHTVEVLSLLSDDVETDDA
GPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQIVIIEHKSIICPGYNAVLHI
HTCIEEVQITALICLVDKKTGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGR
FTLRDEGKTIAIGKVLKLVPEKD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggaccagagagacacggcgcctgagagctgggaggaggacgatgtggaggcccaggcc
gacaccgagctgcagtctgccttcaccggcctcaacgtcaacgctccagagtttgtaccg
tcctttgcaccaagagcgtctccgaacagcgccggctctcagggtccagacgcagttgca
aacatggagatttcagaaccagtagctgctgtagaaaatggagaaacagatactggcaca
gcagaatcgtgggaggagaagggtgaatctgatgatgtggaggcaggaggtgggactatg
caggaaagtgggcctctcagggaagaagcccaagatgagatgatggaggaggatgaggaa
atgcctgcccctaaactgccgcctcctctcccagatgccccgaagaaggagcatgttaat
gtggtgttcatcggacatgtcgatgctggcaagtcaaccattggtgggcaaatcatgtat
ttgactggcatggtggacaaaagaaccctggagaaatatgaaagggaagcaaaagaaaag
aacagggagacatggtatctctcttgggctttagacacaaaccaggaggagagagacaag
gggaaaacagtagaagtaggaagggcatattttgagactgagaaaaagcactttaccatc
ctggatgccccgggccataaaagctttgtgcccaacatgatcggtggagcctcacaagct
gacttggcagtactggtcatttcagccagaaagggcgagtttgagacaggctttgaaaag
ggcggtcaaacccgtgaacatgctatgctggccaaaacagctggagtcaaacacctgata
gtgctcatcaacaaaatggatgatcacacagtaaactggagcttggatagatatgaggaa
tgtaaagagaaattagtgccatttttaaagaaggtgggctttaatccaaagaaagacatc
cacttcatgccctgctctggactgacaggagccaacttaaaggaatcttctgagatgtgt
ccctggtacacggggttaccatttattccacatttggacagcttgccaaacttcaaccga
tcaagtgatggtccaatcagattgcccattgttgataagtacagggacatgggcactgtg
gttcttggcaaactggaatcagggagtattagcaaagcgcaacagcttatcatgatgcca
aataggcacactgtggaggtgctgagcctactctctgatgatgtggaaacggatgacgct
gggcctggagagaacctgaagctacgtctcaaaggcattgaagaagaggagatcctccca
ggtttcattttatgcaatgcagagaacctgtgccactcagggcgcacattcgatgcccag
attgtcattattgaacacaaatccattatatgtccaggttacaatgcagttctacacatt
catacctgcatagaggaagtgcagataacagccttaatctgtctggtggacaagaagacg
ggagagaagagcaagacacgtccccgctttgttaaacaagaccaagtgtgcattgctcgt
cttagaacggcaggaacgatctgcttagaaacgttcaaagacttcccgcaaatgggtcgc
ttcactttgagggacgagggtaaaacgattgctattggcaaggtgttgaagttggtgcca
gagaaggactaa
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