Silurus meridionalis (southern catfish): 124389004
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Entry
124389004 CDS
T08004
Symbol
heatr1
Name
(RefSeq) LOW QUALITY PROTEIN: HEAT repeat-containing protein 1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124389004 (heatr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smeo03009
]
124389004 (heatr1)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124389004 (heatr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_HEATR1
BP28CT
U3snoRNP10
HEAT_EF3_N
HEAT_EZ
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
124389004
NCBI-ProteinID:
XP_046710148
LinkDB
All DBs
Position
7:3069639..3101781
Genome browser
AA seq
2151 aa
AA seq
DB search
MTSLAHQLKRLALPQSDPSLLSRSRVASVLFNPKDAASMDRSTIYALGCTGLDELLGIEP
AFAEFQETLFSQASXKLERSVQSKEVNQKLDKDISLFLTRLSPYFLLKPALKCLEWLVHR
FHIHLYNQDSLIACVLPFHETKVFVRVIQLLKIPDPTHRWHWLHALQKPGVPLARGTLLT
HCYKDLGFMDFICTLVTKSVEAYAQSVHDGKCAQLRVIFSFYSATIVPSLEAVEKVTDSI
IAKLLPYLQLGLKSELLDYKAATYMIVCQLAVKVVMQPELLDSLARQVSRSVTRAPVLTS
EGLSCLIILLQNQKKSVIGQKTFQYLCEVPSLVSTLQCIAASYDISPLLHYFLPKLTNVV
ITQNDDLGNEDSQGASYCRLLKSVIENLPLSTDLANTVARLLLEGYMCCGAELRSDKLSS
FNQKVQGVVRLFENKYPGALDAVLVGCVGEMGSAQQKNLLHQFLSLTLCCGKHQFLANSD
TSLILSLKHPVSSVRTMAIEYMKEILTSGQEGFDEAFLKDALLERLKDDVPDVVLSALSA
MRLYLGRMDLEDTIPCLISLLHRVQPSDSEHWNSVLKEAVRVLDDLPIRDANSDLRAQIS
CELLPFLLITNPAPESAELKLALCVAETHLLSQHPLTQGWVEVLQGVLKKTSSSDVIRVA
NQMLISTLTKNLARMDPSTKRNAIERVCALLAKQGSGERERAAFVVLICALLQTLDSLNE
STHLHTAQILFRLLKPSLRELNTLQTELYVDQDETPQAMYEVLADFLLEMHTGENTEKKY
SLLVLSLLQHFINNLKCPEATFKDELWWNPEKLDMNTCCYLQLLCHLFDTAVSGASQGPL
TFSFRALLHSLFEVHLSDPEHLFKFLSLLWGYSSNLSDQLEIRVTALLQTQALYVGKVLL
TTLPAKKLKVLVSPSSPVVPSLLGCLSCAVREVRRAAVAVLQPLAGVVTSPYHPVLEKLL
ASAEELIADPAYLTQALSVLYDEAVSMTGKNKNKLLSAIEQLLHCVRSPDCPSYMAKVLL
RALQDVNGEYVLANLLPSIEHLMEQCAPDTPVFLPDEALFLQLLLGKYNEASAPLLVRDA
KSLELFITAMGNSSKPYSHMDSFQIIAMEQITKQFFMALGDENIQQRILGVLFDLLVDNK
NPTCSQTISSVFKGIAVDAELVANELMPIDKPKISVSVQQTRRSKVQPKKAQDAPPDAGE
VSWPRVTFILELLQHKKKLKRAQMLVPALFSLLSRCLEVSTEQENMEYTKQLLLNVLLNV
CQKLSPQGGPISKDILDEDKFSVELVVQCVRTSNTPQTHHHALLLLGTAAGIFPEKVLHN
IMPIFTFMGANIMRLDDIYSFQIINRTVQMVIPALINAHGGGSAQPEGQMQVVVTRIIHV
FVDALPHVPEHRRVPILKQLLGTLGPAHFLWVLMLLLFKQHATSGATSSTGPEKETALEH
DQEFWGLLCCEFTVHEQLTTLNKILHFLMTLPKEKEDVPEQRRTIRTIHKNPEENAVDLV
FNVEAHSGKELRHFKFLSVSFMSQLLASSSFVGKVADCEDLTDSSLQELQQSLLEKNLQY
IHTVAQCVEENSDKPTAKFWRALLNKSYDVLDKVNALLPTDTFIMVVRGLMGNQLPSVRR
KAMELLNNRLQQRTQLEEKQVDVLLKLIDDLLSIVGRGCGQTEGQEEEEQAINRQTALYS
LKLLCRSFGSQHQTKFLPVLSRTVELVENTKEERNVLSSALLCVAEVTSTLKALAITQVH
RLMPAILQALKKRKDLLSTEVYLLSAVTALQKTAETLPHFISPYLEDTVSQVAHLTGVAE
RLSTCPQLTVRLSXLSSTLATKVPPRVLLPTLARCYNSMVDSQQHHLHPLMNILKEHIGH
MEKDELNSHHSELTSFFLSALDFRTKHHQGDLEKTSEIEGCVIDCLLVMVMKLSEVTFRP
LFFKLFDWSKTEGAPKDRMLTFCRLVDCIADRLKGLFVLFAGQLVKLFSDLLRQLHTAHT
DKAFFEDEDDALQKSSLLLQYTLDCLHKIFLYDTQRFISKERADTLLVPLVDQLENMLGG
EQVYQTRVIQHLVPCVAQFSVAMGDDSQWKVLNYQILLKTRHNSPKVRFSALLTLVELAS
KLKENYMVLLPESIPFLAELMEDECEEVEHQVQKTIQELETILGESLQSYF
NT seq
6456 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattagcgcaccagttgaagcggctggctttgccgcagagtgacccgagtctg
ctgagccggagccgggtcgcctcggtcctctttaaccctaaagatgctgccagcatggac
agaagcacgatctatgccctgggttgtacagggctcgatgagctgctgggtattgagcca
gcgttcgcagagtttcaggaaacgctcttcagtcaggcttcangtaagcttgagcgcagt
gtgcagtccaaggaggttaaccagaaactagacaaggacatctcgctgttcctcactcgt
ctgtctccatacttcctgctcaagcctgcactcaagtgtctggagtggctcgttcacagg
ttccacattcacttgtacaaccaggacagtctgattgcttgcgtgttgccgtttcacgag
accaaagtgtttgtacgagtcattcagcttttgaagatcccggatcccacacacaggtgg
cactggctacatgcgctacagaaacctggagtacctttggcaagagggactctcctgact
cactgttataaagatctaggtttcatggatttcatctgcaccctggtgacaaagtcggtt
gaggcctatgcacagtctgttcacgacggaaaatgtgcacagctgcgagtgattttttcc
ttttattcggcgaccattgttccctcactggaggcagtggagaaagtcacggattctatc
atagcgaagttacttccttatctacaactgggcctgaaatctgagcttttggattacaaa
gctgcaacatatatgattgtgtgccagcttgcggtgaaggttgtgatgcagccagagctg
ctggactcactggcacgacaagtgagtaggtcagtgactagagctccagtgctgacgtct
gaaggcttgtcgtgcctcattatcctcctccagaaccagaagaaaagtgtcatcggacaa
aagacatttcagtacctctgtgaagttccctctctggtgtccaccttgcagtgtattgca
gcctcctatgatatcagtcctttgctgcactacttcctgccaaagctcactaatgtggtc
atcacacaaaatgatgacctgggaaacgaagactcgcaaggagcttcatactgccgcctt
ctgaaatcagtcattgagaaccttcccttgagcaccgacttggcgaacacggtggcacga
cttctccttgagggatacatgtgctgtggggcagagctcagatcagacaagctctcctct
tttaatcagaaggtccaaggggttgtcaggctctttgagaacaagtatcctggagctctg
gatgcagtcctggtgggttgtgtgggtgagatgggctcagctcagcagaagaacctcctc
catcagttcctctcacttaccttgtgctgtggcaagcaccagtttctggcaaactcggac
acctctctgatcctcagtcttaaacaccccgtgtcttctgtgaggaccatggctatagaa
tacatgaaagagattctcacctccggacaggagggctttgatgaggcattcctgaaggat
gctttgcttgagaggttgaaggatgatgtgcctgatgtcgtgctgtcagctctgtcggca
atgcggctgtatctcggacgcatggatttagaggacacgattccttgtttgatttctctt
ctacaccgcgtccagccgtcggattctgagcactggaactcagtattaaaggaggcggtt
cgagtacttgatgacctgcccatcagggatgcgaactctgatctcagagcccaaattagc
tgcgagctgttacccttcctgctaataacaaatccagcacctgagtcagcagaactgaaa
ctggcattgtgtgtcgctgagacgcatcttctatcccagcatccgctcacccagggctgg
gtcgaagtgttacagggggtgctgaagaaaacttcatcttcagatgttatccgagtggcc
aatcagatgctcatcagcactctgactaaaaacctggcccgcatggatccgtccactaaa
cgcaatgctatcgagcgtgtgtgtgcgttgctggccaagcagggttctggagagcgagag
agggcagcgttcgtggtgttgatttgtgctcttctccagactctggattctctgaatgag
agcacacacctccacacagctcagatactcttcagactgctcaaaccatcactgagagaa
ctcaacacgctacagactgagctgtatgtggaccaggacgaaacccctcaggccatgtat
gaggtacttgcagactttttacttgaaatgcacacgggagaaaatacggaaaagaaatac
agcttgttggtcctctcgctcctccaacacttcatcaacaacctcaaatgtcccgaggct
acatttaaagatgaactctggtggaaccctgagaagctcgacatgaatacctgctgttac
ctgcagctgctgtgccacctgtttgacacagcggtgtctggggctagtcagggacccttg
accttcagttttcgagccctcttgcattccttatttgaggtccacctgagtgaccctgag
catctctttaagtttctgtctctgctgtggggctacagcagtaatcttagcgaccagtta
gagatccgtgtgacagcgttgttgcagacacaggcactgtatgtgggcaaagttctgctg
accactctccccgcaaaaaagctcaaagtcctggtctcaccttcttcaccagtggtgcca
tcgctcttgggatgtctgagttgtgctgtgagggaggtgaggagagcagccgtggcagtg
ttgcaaccacttgcaggagtcgtcacctctccataccaccctgtgttagagaagctgctc
gcatcggctgaagagctcattgctgatccagcctacctcactcaggcactgtctgtactt
tacgacgaagccgtttcgatgactggaaagaacaaaaacaagctgctctcagcaatagag
cagcttttacactgtgtgagatctcctgactgccccagctacatggccaaagtattgctg
cgagcactgcaagacgtaaatggagagtatgttttggccaatctcctcccatccatcgaa
catttgatggagcagtgtgctccagacactccagtttttctgccagatgaggctctgttc
cttcagttgcttctgggcaagtacaacgaagcttctgctcctctacttgttcgagatgct
aaaagcctggagctttttatcaccgcaatgggcaattcctcgaaaccctactcacacatg
gacagttttcagatcattgccatggagcagatcactaagcagttctttatggccctggga
gacgagaacattcagcagaggattctgggagtgcttttcgatctgctggtggacaataaa
aacccaacttgctctcagaccatcagtagtgtcttcaaagggattgctgtggatgcagag
ttggtagcaaacgaactgatgcctattgacaagccaaaaatatcagtgagtgtgcagcaa
actcgccggagcaaggtccagcccaagaaagcacaggatgctccaccagatgctggagag
gtgtcctggccgagggtcacctttattttggagcttctacagcacaagaagaagctaaag
agggctcagatgttggtgccagctctttttagtcttctctccagatgtttggaggtgtcg
actgagcaagaaaatatggagtacaccaaacagcttctcctcaatgttctcctcaatgtc
tgccagaagctctctccacagggtggaccaatcagcaaggacatcttggatgaagataag
tttagcgtagagcttgttgttcagtgtgtgaggacgtcgaacacgcctcaaacgcaccac
catgcgctgctgctgctgggaactgcagccggcatcttcccagagaaagttctgcacaac
atcatgccaatatttacttttatgggggccaacattatgcgccttgatgacatctacagc
ttccagatcatcaacaggacagtgcagatggtcatcccggctctgattaatgctcatggc
ggagggagtgctcagccagaggggcaaatgcaagtcgtggtgacgcgtatcatccacgtt
tttgttgacgctctcccacacgttcctgagcacagacgtgtgcccattctcaagcagcta
ctgggcacactggggcctgcacatttcctctgggtcttaatgctgctcctgttcaaacaa
catgccaccagtggtgctaccagcagcacaggacctgagaaggaaacagcactggagcac
gatcaagagttctggggattgctgtgttgcgagtttacagttcatgagcagcttacaacc
cttaataaaattctacacttccttatgaccctcccaaaagaaaaagaggacgtcccggag
cagagacggacaatacgaacaatacacaaaaaccctgaggaaaatgctgtagatttggtt
tttaacgtagaagcccatagtggaaaagagctccggcattttaagttcctgtctgtgtcc
ttcatgagccagcttctagcctccagcagctttgttggaaaggtggctgattgtgaggat
ttaaccgacagctctctgcaggagcttcagcaaagcctgttggagaaaaatctgcagtac
atccacactgtggctcagtgtgttgaggagaactcggacaaacccacagccaagttttgg
agagcactgcttaacaagtcctacgacgttttggataaggtgaacgccctcctccctacc
gacactttcatcatggtggtgcggggcctgatgggtaatcagctgccgtcagtgaggaga
aaagcaatggagctgctgaacaacagattacagcagaggactcagttggaggagaagcag
gtggatgtgctgctgaaactgattgatgacctcttgagcatcgtgggacggggttgtggc
cagactgaaggacaagaagaagaagagcaagccattaaccggcagacagccctgtatagc
ctaaagctgctgtgccgcagcttcgggagccaacaccagacgaagttcttacccgtcttg
agtcggacggtggagttggtggaaaacaccaaggaagaaagaaatgttttgagcagcgct
ttgctctgtgtggccgaggtcactagcacgctgaaggccctcgccatcacccaagttcac
aggttaatgccagcgattctacaggccctgaagaagcgtaaggatcttctgtctacagag
gtgtatctgttaagtgcagttacagccttacagaaaacagctgaaactctccctcatttc
atcagcccttacctggaggacactgtatcgcaggtagcacatctcacaggggttgctgag
cgtctctccacctgccctcaactgactgttagactctccntcctgagttccacactcgca
accaaggtgcccccaagggttcttctgcccacactggcacggtgctataacagcatggtg
gactctcagcagcaccatcttcatcctctgatgaacatcctgaaagagcacattggacat
atggaaaaggatgagctcaactcccaccattcagaacttacctccttcttcttgtcagca
ttggacttccgtactaaacaccatcagggagatctggaaaagacgtctgaaatcgagggc
tgtgtcatagactgtcttcttgtgatggtaatgaagctttctgaggtcacatttagacca
ctatttttcaagctttttgactggagtaaaacagaaggagcacctaaggaccgaatgttg
accttctgcaggctagttgattgtattgcagacagactgaagggcttgtttgtactgttt
gctggccagctggtgaaactattttcagaccttcttcgccaactccatactgcccacact
gacaaggccttctttgaagatgaagatgatgctttgcagaagagcagtcttttgctgcaa
tatacactggactgcctccataagatctttctgtatgacacacaacgattcatcagcaaa
gaaagagcagataccctcctggtccctctggtagatcagttggagaacatgttgggcgga
gagcaggtctaccagacccgagtcattcagcacttggttccgtgtgtagcccagttctct
gttgccatgggtgatgactctcagtggaaagttctcaactaccagatcctgctgaaaaca
cggcataacagtcccaaggtgcgcttctcggcactgctgacgttggttgagttggcaagc
aaactgaaggagaactacatggtgcttctaccagagagcatcccgttcctggctgagcta
atggaagatgaatgcgaggaggtggaacaccaggtgcaaaagactattcaggagttggag
acgatcctgggagaatccttgcagagctacttttaa
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integrated database retrieval system
