Silurus meridionalis (southern catfish): 124389038
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Entry
124389038 CDS
T08004
Symbol
valopb
Name
(RefSeq) vertebrate ancient long opsin b
KO
K04256
c-opsin
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124389038 (valopb)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
smeo04030
]
124389038 (valopb)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124389038 (valopb)
G protein-coupled receptors [BR:
smeo04030
]
Rhodopsin family
Vision
Opsin
124389038 (valopb)
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GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srw
7TM_GPCR_Srsx
7TM_GPCR_Srv
7tm_4
Motif
Other DBs
NCBI-GeneID:
124389038
NCBI-ProteinID:
XP_046710199
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All DBs
Position
7:12786157..12790971
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AA seq
403 aa
AA seq
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MSTPLASLDGFPSVVNGGSYTDTPVLMKPRDPFAGPLESVAPWNYTFIACLMFAVTALSL
AENSTVMIITYRFKQLRQPLNYIIVNLSVADFCLSLVGGTISFLTNARGYFFLGRWACVL
EGFAVTFFGIVALWSLAILAFERFFVICRPLENVRLGVKHAAMGLLFVWTFSFICTIPPV
LGWNSYTVSKIGTTCEPNWYSRDYNDHTYIITFFVTCFILPLGVIIVSYGKLMQKLRKVS
NTHGKLGNARKPDRAVARMVIVMIIAYMVGWTPYAAVSIIVTAYPSINIDPRLAAAPAFF
AKTAAVYNPIIYVFMNKQFRKCLIQVFKGNGMSIDSSHLNPTSDKGPITKTESHLGEMSS
IAAHVPMTTCNFEKTDEEDEEEAQNQNDGSTQLPLSESRVCPL
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccgctcgccagcctggacgggttcccgtctgtggttaacggcggttcctac
accgacactccggtacttatgaagcctcgggatccgttcgcaggtccgctcgagtcagtc
gcgccctggaactacacgtttattgcgtgcctgatgtttgcggtcactgccctctcgctg
gccgaaaactccaccgtcatgataataacgtacagatttaagcagctgagacagcccctg
aattatattattgtcaacttgtctgtggctgacttctgcttgtcgctggttggaggcaca
atcagtttcctgaccaacgcgcggggttacttcttcctgggcaggtgggcgtgcgtgctg
gagggattcgccgtcacttttttcgggattgtggctctatggtctttggcaatcctagct
tttgaacgtttctttgtgatctgccgaccactggaaaatgtccgtttgggagtcaaacat
gcagcaatgggtcttttgttcgtctggactttctcgttcatctgtactattcctccagta
cttggctggaacagctacacagtcagcaagattggcactacttgtgaacctaactggtac
tcaagagactacaatgaccatacttacataatcaccttctttgtcacctgctttatctta
ccacttggagtaataattgtttcctatggaaaactcatgcagaaactcagaaaggtatcc
aacactcatgggaaattaggtaatgcacggaaaccagaccgggctgtggcacggatggtc
attgtaatgataattgcatatatggttggctggacaccttatgcagcagtctccatcatc
gtcacagcctatccatctatcaatattgaccctcgccttgcagcagcaccagccttcttt
gctaagactgcagctgtgtacaatccaatcatttatgtgtttatgaacaagcagttcagg
aagtgcctgattcaggtgtttaaaggcaatggcatgagcattgactcatcccatttgaac
cccacctcagacaaagggcccatcacaaaaacagaaagtcacctgggagagatgtcatcc
atcgctgcccatgtgcctatgaccacatgcaactttgagaaaactgatgaggaggatgaa
gaagaagcccagaaccagaatgatggatccacgcaacttcctctatccgaaagcagagtt
tgccctctgtag
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