Silurus meridionalis (southern catfish): 124389060
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Entry
124389060 CDS
T08004
Symbol
itgb3b
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-3b
KO
K06493
integrin beta 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03266
Virion - Herpesvirus
smeo04081
Hormone signaling
smeo04145
Phagosome
smeo04148
Efferocytosis
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04810
Regulation of actin cytoskeleton
smeo04820
Cytoskeleton in muscle cells
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
124389060 (itgb3b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
124389060 (itgb3b)
04512 ECM-receptor interaction
124389060 (itgb3b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124389060 (itgb3b)
04148 Efferocytosis
124389060 (itgb3b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
124389060 (itgb3b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124389060 (itgb3b)
04810 Regulation of actin cytoskeleton
124389060 (itgb3b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124389060 (itgb3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124389060 (itgb3b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124389060 (itgb3b)
04515 Cell adhesion molecules [BR:
smeo04515
]
124389060 (itgb3b)
04090 CD molecules [BR:
smeo04090
]
124389060 (itgb3b)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
124389060 (itgb3b)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124389060 (itgb3b)
Cell adhesion molecules [BR:
smeo04515
]
Integrins
Integrin beta subunits
124389060 (itgb3b)
CD molecules [BR:
smeo04090
]
Proteins
124389060 (itgb3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
I-EGF_1
PSI_integrin
EGF_integrin
EGF_2
EGF_TEN
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
124389060
NCBI-ProteinID:
XP_046710230
LinkDB
All DBs
Position
7:23312960..23338959
Genome browser
AA seq
789 aa
AA seq
DB search
MAKPPTDVRIYSLLLFFLISEQVIGSNICTSRGASTCQQCLAVHHSCAWCFQEDFGSNWP
GASRCDLKEKLIEAGCNMEELEYPISQMTVTEDKTLSDKASGSTTDVTQIQPQKLHISLR
PDDSRTFTLQVRQVADYPVDLYYLMDLSYSMNDDLTQLRKLGNGLAEEMSKTTSNLRMGF
GAFVDKPVSPYMYISPPEAVKNPCYSIPYKCQPQFGYRHVLSLTDQVNRFTEEVKKQKVS
RNRDAPEGGFDAILQAAVCKERIGWRPGASHLLVFTTDAKTHVALDGRLAGIVQPNDGQC
HMGVDNVYNMSTTMDYPSLALITEKMSENNINLIFAVTNTVLSLYKNYTDLIPGTVVGTL
SHDSRNVIELIQDAYAKLRSKVELELLNVPEELSLSFNATCLNNEFIPGLKSCSGLKRGD
QVSFSVEVRARGCPKEKTKTFTIKPVGFKDTLQITVDFECECKCQAQAQPDSTMCHQGNG
TYECGICLCHAGRLGPKCECAEGDYSLSEQDMHRPXNKVICSGRGDCVCGQCVCHNNDFG
KVWGKRCDCDDFSCLRYKGELCSGHGTCSCGFCQCYPDWSGENCNCSTRTDTCMSSLGLL
CSGRGQCVCGSCECTQPGAYGSTCDKCPTCPDACTMKKDCVECKHFKRGRLFEDESCARI
CRDEIILVDDIILHDKNAVNCTYKDEDDCVQRFQYYEENSGKSILSVVKEPDCPKGPDIL
VVLLFVAGAILILGLVSLLIWKLLVTIHDRREFARFEEERARAKWETSHNPLYKGATSTF
MNITYRGKE
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccgccgacagatgtgcggatttattctctgcttttattcttcttgatttca
gaacaagtcattggctctaatatctgcacctctcggggagccagcacgtgtcaacagtgt
ttagcagtgcaccattcctgtgcctggtgcttccaagaggattttgggtcaaactggcca
ggagcatcacgctgtgacttaaaggagaaactaatagaagcaggatgcaacatggaagaa
ctcgagtatcccattagccagatgaccgtaacagaggacaagactcttagcgacaaggcc
tcgggatccaccactgatgtcacacagatccaaccacagaaactgcacatttctctaaga
cctgatgactcgcggacgttcacgctgcaggtgaggcaggttgcagactaccctgtggat
ctgtattacctgatggacttgtcctactctatgaatgatgacctgacacagctgaggaag
ctgggaaatggactggctgaggagatgagcaaaaccaccagcaaccttcgcatgggcttc
ggcgcttttgtcgacaaacctgtttcgccatatatgtacatctctccaccagaagctgtg
aagaacccatgctattcgataccgtacaaatgccagccgcagtttggctaccgacatgtc
ctttcgctgactgatcaagtgaaccgcttcacagaggaagtaaagaagcagaaggtatct
cggaacagagatgcccctgaaggaggctttgatgccatcctccaggcggccgtgtgcaag
gagaggatcggttggcgtccgggtgcatctcacctgctcgtgttcaccacagatgccaag
actcatgtagcactggatggacgcttggctggcattgtgcagccaaatgatggacagtgt
cacatgggtgtggataacgtatacaacatgtccactacaatggactatccatctctcgca
ctgatcacggagaagatgtcagagaacaacatcaatctcatatttgctgtgacaaatact
gtactgtctctttacaagaattacactgatctgatacccggtactgtggtggggactttg
tctcatgactcccgcaatgtgatcgaactgatccaggatgcctatgctaaactgcgatct
aaggttgagctcgagctcctgaatgtgcctgaagaattaagcttgtctttcaatgccacg
tgtttgaacaacgagttcatccctggacttaagtcttgctccggactcaagagaggagac
caggtctcgttcagtgtcgaagtacgtgccaggggctgtcctaaggagaagacgaaaaca
ttcactattaaacctgttggcttcaaagacacactccagatcactgttgacttcgagtgt
gagtgtaagtgccaggctcaggctcagcccgacagcactatgtgccaccaaggcaacggg
acctacgagtgcggcatttgcctgtgccatgcaggacgactgggtccgaagtgcgagtgt
gccgaaggtgattacagcctcagtgagcaggacatgcaccggcccnntaacaaagtgatc
tgcagcgggcgtggggactgcgtgtgcggtcagtgcgtgtgccacaacaatgatttcgga
aaggtctggggaaagaggtgcgactgtgatgacttcagctgcctgcgctataaaggagag
ctgtgctcaggacatggcacatgctcgtgtggtttctgccagtgttacccggactggtca
ggggaaaactgtaactgctccacccgcacagatacctgcatgtccagcctggggttgctg
tgcagcggccgtgggcagtgtgtgtgtggaagctgtgagtgtactcaacctggggcctat
ggctccacctgtgataagtgtcccacctgccctgatgcctgcactatgaaaaaggattgt
gtggagtgtaagcattttaaaagaggcagactcttcgaggatgaaagctgtgcccgaatt
tgccgagacgagattatacttgttgatgatataattttgcacgataagaatgctgtgaac
tgcacctacaaggacgaggacgattgtgtccagcggttccagtactatgaggagaacagc
gggaagtccattctgtctgtggtaaaagagccagactgccccaaaggccctgacatcttg
gtggttctccttttcgtcgctggagctatactaatcctgggtctcgtctccttgctcatt
tggaagctgctggtgacgattcacgaccgtcgtgagttcgccaggttcgaggaggagcga
gcacgagccaagtgggaaacaagtcacaatcctctctacaaaggtgctacttctaccttc
atgaacattacctatcgaggaaaagagtga
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