Silurus meridionalis (southern catfish): 124389287
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Entry
124389287 CDS
T08004
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124389287 (rnf40)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124389287 (rnf40)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
124389287 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
BRE1
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
TPX2
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
124389287
NCBI-ProteinID:
XP_046710589
LinkDB
All DBs
Position
7:12717192..12729685
Genome browser
AA seq
1004 aa
AA seq
DB search
MSGTGGKRAPGGDSPPGPPEKKMKKEEKTTTTLIEPIRIGGVSSTEEMDMKVIQFKNKKL
SERLEQRQAIEDELREKIEKLEKRQATDDATLLIVNRYWAQLEENVQELLQRVEPKAGPV
PAQTPVSPPASVPDPETAPLPTPDIPAPLPTQLEGDGGLPQPPLPADEEEQRQQQSEQLQ
LQEQDKEQEQTDTAEKPPKEPVVDGLAAPPPPPLLSESAKAFLSTLDNSSEEELSLQLQD
RMQFSKAAVACIVCIFDGLHSAIEDLCARTQAAVSEDDSHREIISTNRSLFEENNKLQDL
ASSLQGRHHKMSMEYNELVDKVTSSETKVSEMETAVEDLQWDIEKLRKREQKLNKHLAEA
LEQLNSGYHAIGRSGGLPGGQITLNIQKFESLNAELEQNQELANSRMAELEKLQQELQEA
VRESEKLKIDLRNIPEEVVKETPEYKCLQSQFSLLYNESLGVKTQLDEARALLLTAKNAH
LRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREM
RHLISSLQNHNHQLKGDVQRYKRKLRETQMEINKIKCQSGDNGSMLALEESVNDGGLDVK
KEEEDEQDEEEERRRELERQRAREREREAERERERERERERQRSEELKRKDSDTLKMLRT
ELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVDELRQRVRELEERERKE
SKKLADEDALRKLRVAEETIEHLQKKLTATKQEEEALLSEMDVTGQAFEDMQEQNSRLMQ
QLREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQVDAQLLVVQKLEEKEGI
LQSSLATLEKELALRTQALELNKRKAVEAAQLAEDLKVQLDHTQAKLREIQASVLENRSA
RERESGNLKRAQEDLSRLRRKLEKQKKVEMYTDADEILQEEINQYKAKLRCPCCNTRDKE
TVLTKCFHVFCYECLKTRYDTRQRKCPKCNAAFGANDFHRIYIT
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcactggaggaaagcgagccccgggaggagacagtcctcctgggccacccgag
aagaagatgaagaaagaggagaaaaccacaactactctcatcgagcccatccgcattgga
ggcgtctcctctacggaggaaatggacatgaaggtaatccagttcaagaacaagaagctc
tctgagcgtctcgagcagaggcaggcgatcgaagacgagctgagagagaaaattgagaag
ctggaaaaacgacaggcgactgatgacgccacacttctaatcgtcaaccgatattgggct
cagcttgaagaaaacgttcaggagttgctgcagcgagttgaacctaaggctggtccagtg
cctgcccaaacccctgttagccctccagcatctgtccctgatcctgaaactgccccttta
cccacccctgatattccagctcctttgccaactcaattggaaggagatggcggccttcca
cagcctccactgccagcagacgaggaggaacaacggcagcagcagtctgaacaactccag
ctgcaggagcaggataaggagcaggagcagactgatacggcggagaagccgcccaaggag
ccagttgttgatggacttgctgcccctcctccacctcctctattgagtgaaagtgcgaag
gctttcctctctactctggataacagcagtgaagaggagctcagccttcagctacaagac
aggatgcaattcagcaaagcagcagtggcctgcatagtctgtatctttgacggcctgcac
agcgccattgaagatctgtgtgctcgtactcaagctgcagtatctgaggatgatagtcac
cgagagatcatctccacaaatcgcagtctattcgaggagaacaataaactccaagatctt
gcctcctcgctgcagggaagacaccacaaaatgtcaatggagtataatgaattggttgat
aaagtgaccagctctgagactaaagtctcggagatggagacagctgtggaggacctgcag
tgggacatcgagaagcttcgcaagagagagcagaagctcaataagcaccttgcagaggcc
ctggaacagctgaattcaggctaccatgctattggtaggtctggtggcttacctggtggt
cagataactctcaacatacagaagtttgagtcactaaatgcagagctggagcagaatcag
gagctggccaatagccgcatggcagagctggagaaactgcagcaggagttacaggaggca
gtgagagaaagtgagaagctcaagatcgaccttcggaacattccagaggaggtggtgaag
gaaacgccggagtacaagtgtcttcagtctcagttctctctgttgtataacgagtctctg
ggagtgaagacgcagctggatgaggcccgggctctgctgcttactgccaaaaatgctcac
ctacgccagatagagcacatggagagtgacgagttgtctcttcagaagaagttgcgaact
gaagtcatccagttagaggacacactagctcaagtgcgcaaggaatacgagatgctacgg
attgagtttgaacagaatcttgcagcgaatgagcaagcaggtccaataaacagagaaatg
cgacacctaatcagcagtcttcagaaccataatcaccagctcaagggagatgtgcagaga
tacaagaggaagttacgagagacccagatggaaatcaacaagatcaagtgccagagtgga
gacaatggcagtatgctagctctggaggagagtgtgaatgacggaggactggatgtgaaa
aaggaggaggaggatgaacaagacgaggaggaggaaagaaggagagagttggagagacaa
cgagccagagaacgtgagagagaggcagagagagagcgagaaagagaacgggaacgagaa
cggcagcgcagtgaggagctgaagagaaaagactccgacacactgaagatgctacgaaca
gagctcaagaaagcacaagaatcgcagaaggagatgaagctgctgctcgacatgtataag
tctgctccaaaagaacagagagacaaagtgcagttaatggcagctgagagaaaatcaaaa
gcagaggtggatgagttgaggcagcgggtacgagagttggaggagagagagaggaaagag
agtaagaagctggctgatgaagatgctttgaggaagcttcgagtggcagaggagaccatt
gaacatctgcaaaagaagcttactgccactaaacaggaagaggaagccttgctaagtgag
atggacgtgacgggtcaggcttttgaggacatgcaggaacagaacagtcgcttaatgcag
cagctgcgtgagaaagatgatgccaacttcaagctgatgagtgagagaatcaaatccaac
cagatctataaactgcttagagaggagaaagaagaactggctgaccaggtgcttactttc
aaaacccaggttgatgctcaattgctggttgtgcaaaagctggaggaaaaggagggcatc
ctacaaagctcactggctacactggagaaagagttggcactacgcacacaagctctagag
ctcaataagcgtaaagcagtagaagcagctcagttggctgaggatttaaaggtgcagctg
gatcacactcaggccaagctgagggagatccaggcttctgtgctggaaaaccggagtgca
cgtgaaagagaaagtggcaacctcaaacgtgcacaggaggacttgtcaagactccgccga
aagctcgagaaacagaagaaggtggagatgtatactgatgcagatgagatcctgcaagaa
gaaattaatcagtacaaggctaagctgcgttgcccctgctgtaatacccgggataaggag
acggtgcttacaaagtgtttccatgtcttctgttatgagtgcttgaagacccgttatgat
actcggcagaggaaatgtcccaagtgtaatgctgcttttggagccaatgacttccatcgc
atttacatcacttaa
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integrated database retrieval system
