Silurus meridionalis (southern catfish): 124389305
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Entry
124389305 CDS
T08004
Symbol
polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03020
RNA polymerase
smeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124389305 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
124389305 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124389305 (polr2a)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124389305 (polr2a)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124389305 (polr2a)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124389305 (polr2a)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124389305 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
124389305
NCBI-ProteinID:
XP_046710613
LinkDB
All DBs
Position
7:complement(25008851..25022147)
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFDYANERALRRTLQEDVLKEVMTNAHVQSSLEKEFEKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLLNIHLRSTLCSRRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPSMTPWNTGATPAYGSWSPSVGSGMTPGAAGFSPSVASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYXPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTXPSYSPTSPSYSPTSPRXS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYXPTSPSYSPPLH
HTPVKPSLHPQSPTYTPSSPSYSPSXPVLLPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagccctgatgagcttaaacggatgtccgtcacagaagggggaatcaag
taccccgagaccacagagggaggacggcccaagctgggtgggctcatggaccctcggcag
ggcgtgatcgagaggtcggggagatgtcagacttgtgcagggaacatgactgaatgccct
ggtcacttcggtcacatcgagctggccaagcccgtctttcacgtaggcttcatcacgaag
atcatgaaggtcctccgctgtgtgtgtttcttttgctccaagctgctggttgatgcgaac
aacccaaagatcaaagacatcctgggcaagtcgaaaggccagcctcgaaagcgcctgatg
cacgtgtatgacctgtgcaaaggtaaaaacatctgcgaaggcggagaggagatggacaac
aagttcggagttgagcagcaggagaatgacgaagatctcacgaaagaaaagggtcacggc
ggatgcggacgctaccagcctcgtatccggcgctcgggcctggagctgtacgccgagtgg
aagcacgtgaacgaagactctcaggagaagaagatcctcctcagccccgaacgcgtacac
gagatctttaaacgcatctcggacgaggaggatctcatcctggggatggatcccaagtac
gcacgacccgagtggatgatcgtcacggtgctgcccgtaccaccgcttgcagtcagaccg
gctgtggtcatgcagggctcggcccggaaccaggatgatttgactcacaagctagcagac
atcgtgaaaatcaataaccagctgcggcggaacgagcagagcggcgctgcggctcacgtt
atagctgaagacgtgaagctcctgcagttccacgtggccaccatggtggacaacgaactg
ccgggtctgccccgagcgatgcaaaaatctggtcgtccgctcaaatccatcaagcagagg
ctgaaggggaaggaaggccgtgtgcgaggaaacctgatgggaaagcgtgtggacttctcc
gcccgaacggtcatcacacccgaccccaacttgcagatcgaccaggtgggcgtgccccga
tccatcgccgctaacatgaccttccctgagatcgtcactccgttcaacatcgacagattg
caggagctcgttcggagaggaaacagtcagtatcccggagccaaatacatcatccgtgat
aacggcgaccggatcgacctccggttccacccgaaaccgagcgaccttcaccttcagatc
ggctataaggtggagcggcacatgtgcgacggtgacattgtcatctttaacagacagccc
accttgcacaagatgtctatgatgggccacagggttcgaatcctgccatggtctactttt
cgactcaatctcagtgtaacgactccctataacgcagacttcgacggagacgagatgaac
ctgcatctgccccagtccctcgagacccgtgccgagatccaggagcttgccatggtaccg
cgtatgatcgtcacaccgcagtccaacagacccgtcatgggtatcgtgcaggacacgctt
acagccgtgcgcaagtttaccaaaagagacgtcttcttagagaggggtgaagttatgaac
ctactgatgttcctgtcctcctgggacggcaaagtgccccagcctgccatcttgaagcca
cgcccgctgtggaccggcaaacagatcttcagcttgatcattcccggccacatcaacgtg
atccgtacgcacagcacgcatccggacgacgaggacagcggcccgtataagcacatctct
cctggagacacaaaggtgatcgtggagaacggagagctgatcatggggatcctgtgtaag
aagtccctcggtacgtctgccggttctcttgtccacatctcctacctggaaatgggtcat
gacatcacccgtcttttctactccaacattcagactgtcgtcaacaactggctgctcatc
gagggtcactcaatcggcatcggtgattctatcgctgacgcgaagacgtatcttgacatc
cagaacacgatcaagaaggccaagcaggatgtgatagaggtcatcgaaaaggctcacaac
aacgaactggagccaactccaggtaacactctgagacagacctttgaaaatcaggtcaac
cgtatcctgaacgacgctcgagacaagactggatcttctgctcagaagtcgctgtcggag
tacaacaatttcaaatccatggtggtggccgggtctaagggctccaaaattaacatctca
caggttattgctgtggtgggccagcagaacgttgagggtaaacgaatcccttttggcttc
aagcaccgcactcttcctcacttcataaaggacgactacggtcctgagagcagggggttt
gtggagaactcgtacctcgccggtctgacacctacagagttctttttccacgccatggga
ggtagagagggtctgatcgatacagccgtcaaaacagctgagacaggttatatccagcgt
cgtctgatcaaatctatggagtctgtaatggtgaaatacgacgccactgtgaggaactcc
attaaccaggtggtgcagctgcgatacggagaggacggcctggctggagaggctgtcgag
ttccagaacatggctacgcttaaaccatcccataaagcatttgagaagaagttcaagttc
gactacgctaacgagcgagctctccggcgcacgctgcaggaggacgtgttgaaggaagtg
atgaccaatgcgcacgtgcagagctctctggagaaggagtttgagaaaatgaaggaggac
agagaggtcttgagggccattttccctactggagacagcaaggtagtgctgccgtgcaat
cttgcaagaatgatctggaacgcgcaaaagattttccgtatcaacccgcgaactccgacc
gatctcaaccctttaagagtagtggaaggcgtgcaagaactgagcaagaagctggtgatc
gtgaacggggacgatcccttgagcaagcaggcccagcagaacgccacgctgctcctcaac
atccaccttcgctccaccctctgttccagacgcatgacggaggagtttcgactcagctct
gaggccttcgaatggctcctgggagagatcgagacgaagttcaaccagtcgattgttcac
ccaggtgagatggtgggtgctctggctgctcagtctctgggtgagccggccactcagatg
accctgaacaccttccactacgctggagtgtccgctaagaacgtcaccctgggtgtgcct
cgtctaaaagagctgatcaacatctccaagcgtcccaaaactccgtctctgacagtgttc
ctgttgggccaggcggcccgcgacgcagagcgcgccaaagacatcctgtgtcgcctggag
cacacgacgctgcgcaaggtcacggccaacacggctatctactacgaccccaaccctcag
agcacggtagtgtccgaggaccaggagtgggtgaacgtttactacgagatgcccgacttc
gacgtgacccgtatttctccttggcttctgcgtattgagttggacaggaaacacatgact
gaccgcaagctctccatggagcagatcgcagagaagattaatgcaggttttggtgacgat
ctgaactgcatcttcaacgacgataacgctgaaaagctggtgctgcgtatccgaatcatg
aacagcgatgagaacaagttccaggaggacgaggaggtggtggacaagatggacgatgac
gtgtttctgcggtgcattgagtccaacatgctgacagacatgaccctacaaggcatcgag
cagatcagcaaggtctacatgcatctccctcaaacagagaacaaaaagaagaccataata
acggaggagggagaatttaaagcgctacaggaatggatcctcgagacggacggcgtcagt
ctcatgagagtcctcagtgagaaggacgtcgacccagtcaggaccacttccaacgatatc
gtggagattttcactgtcctggggatcgaggcagtgcgtaaggctctggaaagagagttg
tatcacgtcatctcttttgacggttcctacgtgaactatcgccatcttgccctcctgtgc
gacaccatgacctgcagaggtcacctcatggccatcacccgtcacggcatcaacagacag
gacaccggcccgctcatgaagtgctcttttgaagagacggtggatgtcttgatggaagcc
tcgtctcacggagaatgcgatcccatgaagggcgtgtctgaaaacatcatgctcggacag
ctggctcctgcaggcaccggctgcttcgacctgctcctggatgccgaaaaatgcaaatac
ggcatggagattcccaccaacattcctggaatcagcgtagccggaccaaccggaatgttc
tttggctccgcccccagccctatgagtggcatgtctccatccatgacgccctggaacact
ggggccaccccggcgtacggctcatggtctcccagcgtcggaagtggaatgactcccgga
gctgccgggttttcacccagtgtcgcctccgatgctagcggcttctctccggggtactcg
cctgcctggtctcctacacccggctcacctgggtctcctggtcctgccagtccttacatt
ccctctccaggtggcgccatgtctcctaactattcccccacgtctccggcgtacgagccg
cgctcccctggaggctacaccccccaaagccccggctactcccccacatccccatcgtac
tctcccacctctccttcctactctcccaccagccccaactacagtcccacatctccatct
tattccccaacctctccgtcctactctccaacttctccgtcttattccccgacctcccca
agctattcacccacgtcgccctcgtactccccgacgtccccgtcgtattcgcccacctct
ccatcttacntcccgacatctccttcgtattccccgacgtcgccctcttactccccgacg
tcccccagttacagccccacctctccgtcgtactcgcccacctctccatcctactcgccc
actntcccgtcgtactccccaacctctccttcgtattctccaacgtcgcctcgtngttcc
ccgacctctcccagttacagcccgacctcacccaattacacgcccacttcgcccagctac
tcgcccacgtctccgtcttacagccccacctcgccttcgtactctcccacgtctcccaat
tacacacccaccagtcccaactatntccccacatcgccatcatactccccacctctccat
catactcccgtcaagccctcgttacacccccaatcccctacgtacaccccgagctcaccc
tcttacagcccgagcnntcccgtcttactccccacttctccaaaatacacccccacctct
ccatcatacagccccagctctccggaatataccccaacctcacccaaatactctcctact
tcacccaagtactcgcctacttctcccaaatacagccccacgtccccgacctactcgccc
accacgcccaaatacagccctacgtctcccacgtactctcctacgtctcctacctacacc
ccgaccagcccgaagtactcgcccacttctcctacgtactcgccgacgtctccgaaatat
tcccccacgtctccgacgtactcgcctactagtcccaaaggctcgacttacagcccgacc
tcgccggggtacagtccaacgtctccgacctacagcccggccatcagccccgacgacagc
gacgaggaaaacaactga
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integrated database retrieval system
