Silurus meridionalis (southern catfish): 124389389
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Entry
124389389 CDS
T08004
Symbol
msh2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124389389 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124389389 (msh2)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124389389 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
124389389
NCBI-ProteinID:
XP_046710769
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Position
7:complement(17835251..17850939)
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AA seq
932 aa
AA seq
DB search
MAVQPKQNLSMDSASETGFINFFFSMPEKXDTTVRIFDRNDYYTVHGKDAGFAAKEVFKT
NSVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVRQYRVEVYRNKAGSKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGIGEGAAGVVGIRLGTGSDGQRVVGVGYVDSILRKLGVCEF
PDNDQFSNLEALLVQIGPKECVLPAGDTAGDLGKLRQVVQRGGILLSDRKKAEFATKDIV
QDLNRLLKACKGETVSSAALPEMEKQIAMSCLAAAIKYLELLSDEANFSSFKMTTFDLSQ
YMRLDNAAVQALNLFQASSDDQTGTHSLAGLLNKCRTPQGQRLVNQWLKQPLMDKNKIEE
RLDLVESFVEDSELRQSCQEDLLRRFPDLNRLAKKFQRQNANLQDCYRVYQAVAQLPALV
LALERHGGKHQVLLNAAFITPINDLVSDFNKFQEMIETTLDMNQIEHHEFLVKPSFDPTL
SELRESMDQLEKSMQATLKSSARELSLDAGKTIKLESNAQIGYFFRVTCKEEKTLRNNKK
FTTLDVQKNGVRFTNSKLSSLNEEYTKSRQEYEEAQNAIVKEIISIAAGYVDPLQTLNDI
IAQLDAVVSFAVVSHAAPVPYVRPMILEKGTGRLVLKGARHPCVEAQDDVAFIPNDVTFA
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDEAEISVVDSVLARVGAGDSQ
IKGVSTFMAEMLETAAILRSATESSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTALAQQVSTVNNLHVTALTTDNTLTMLYRVKTGVCDQSFGIHVAELANFPK
HVIANAREKALELEEFQDVSGGDEDAGPEAKKRRLERKDGEKIIEDFLRKVKTLPVQDMT
DEAIKAELHKLKAEVVAHNNTFVNEIVLMPRR
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcaaccaaaacagaacttgtccatggacagcgcgtccgaaaccgggtttatc
aacttttttttttctatgcccgaaaaancggacactacggtgaggatatttgatcgcaac
gattactacaccgtgcacggaaaagatgctggatttgcggcaaaggaagtcttcaagacg
aatagcgttattaaaatgctcggtgcaggcagcaggaggctggagagtgtggtgctcagt
aagatgaactttgaggcgtttgtgagagacctgctgctggtcaggcagtaccgtgtggaa
gtgtacaggaataaagctggaagtaaaagcagcaaagatcatgactggcaaatagcctac
aaggcctctccaggaaacctgacccagtttgaggaggttctttttggtagtggtggaggt
ataggggaaggggctgctggagttgtggggatccggcttggaacaggaagtgatggacag
cgtgtcgtgggcgttggatatgttgatagcatactccgaaagctcggcgtctgcgagttt
ccagataatgaccagttctctaatctggaagctctcctggtgcagattggccctaaagag
tgtgtgcttcctgctggagatacagcaggagatctgggtaaactaagacaggtggtgcag
cgtggaggtattctgctctcagacaggaagaaggcagagtttgcaaccaaagatatagtt
caggatcttaaccgtttactgaaggcttgcaagggggagacggtgtctagtgctgcactc
ccagagatggagaaacagattgccatgtcttgtttggctgctgccataaagtatctggag
ctcctttctgatgaggccaacttcagttctttcaaaatgaccacatttgacctcagccag
tacatgcgtctcgacaacgcggctgtgcaggcgcttaatctcttccaggcttcctctgat
gatcaaacaggtacacactccctggcaggacttttgaacaagtgtcgaacacctcagggc
caacgcctggtcaaccagtggcttaaacaacctctgatggacaaaaacaagatagaggaa
aggctagaccttgtggagagcttcgtggaggactcggagctgaggcagagctgccaggag
gacctgctgcgtcggtttcctgacctgaatcgcctggctaaaaaattccagcggcaaaac
gccaacctgcaggactgttatcgtgtgtaccaggctgtggctcaacttccagcactggtg
ctggccctagagaggcatggtggcaaacatcaggtcctgctgaatgcagcatttattaca
cccatcaatgaccttgtctccgatttcaacaagtttcaggagatgattgaaacgacactg
gacatgaaccagattgagcaccatgaatttctggtaaagccctcctttgaccccacactg
agtgaactaagggaaagcatggaccagctggagaaaagcatgcaggcaactctaaaaagt
tcagcccgagagcttagtttggatgcaggcaagacgattaagctagaatcgaatgctcag
attggatacttttttcgtgtcacctgcaaagaggagaaaactctgcgcaacaataagaaa
tttacaaccttggatgtgcagaaaaatggagtccgctttaccaacagtaagctgagctct
ttgaatgaggagtacaccaaaagcagacaagagtacgaggaggcccagaatgccattgta
aaagagataatcagcattgctgctggctatgtcgaccctctgcagacactaaatgacatt
atagcacagctagatgcagtggtaagctttgcagtcgtatcccatgctgcccctgttccc
tatgtgaggcctatgatactggagaaaggtaccggcaggttggtcctgaagggagcacgt
catccttgtgtggaagcccaagacgatgtggccttcatacctaatgatgtgactttcgct
aaaggaaaggagatgttccacatcattacaggtccaaacatgggtgggaaatcgacctac
attcgtcaggtgggtgtgatcgtgctgatggcgcaggttggctgctttgtgccatgtgat
gaagcggagatcagtgtggtagacagtgtgctggctcgtgttggtgcgggggacagccaa
attaaaggcgtctccacgtttatggctgagatgctcgagacagccgctatcttacgttct
gccaccgagagctctctgatcatcattgatgaattaggacgagggacttctacatacgat
ggtttcggcttggcttgggccatctctgagtacattgccacacgcctaaaatccttctgc
ctgtttgccactcacttccatgagctgaccgctttagcacagcaagtgtctaccgtgaac
aacctccatgtcactgccctgactacagacaacactctcacaatgctgtacagggtaaaa
acaggtgtgtgtgaccagagctttgggattcacgtggctgagctggcaaacttccccaaa
catgtcattgctaatgctcgagaaaaggctttggagcttgaggagtttcaggatgtctcc
ggaggtgacgaggatgctggacctgaagctaaaaagagacgcttggagagaaaggatggt
gagaagatcattgaggatttcctgagaaaggtgaagactctgccggtccaggacatgact
gatgaggctatcaaagctgagctgcacaaactgaaggctgaggttgttgcccataacaac
acttttgttaatgagattgttctcatgccgagaagatga
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