Silurus meridionalis (southern catfish): 124389565
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Entry
124389565 CDS
T08004
Name
(RefSeq) M1-specific T cell receptor beta chain-like
KO
K10785
T-cell receptor beta chain V region
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04020
Calcium signaling pathway
smeo04514
Cell adhesion molecule (CAM) interaction
smeo04672
Intestinal immune network for IgA production
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
124389565
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
124389565
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
124389565
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Gene cluster
GFIT
Motif
Pfam:
C1-set
Ig_3
V-set
C2-set_2
Ig_2
C2-set_3
ig
I-set
Marek_A
Motif
Other DBs
NCBI-GeneID:
124389565
NCBI-ProteinID:
XP_046710900
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All DBs
Position
8:complement(20529389..20549549)
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AA seq
485 aa
AA seq
DB search
MFTLGVLLLLLLGTRETLAVQLLQERSSVMATAGSTMTFQCNIDARFSMSSYTMQWYKQA
YHGAPVQFLMMEYELATKKMSIALVKAENKFSLHVSNLTLQDGGVYYLHCANANPAHFGA
GTKLTVLDPNISITKPASVKVLSVSEKETCTKTNVTLVCVAKGFYPDHVNVYWTDDNGNR
STDVSTDEIATRNGSFYSITSRLNINYKTEWTKGLTFTCNVVFFDGTEYSTHSDSETGPK
IESDGEYAAETYVRKVKTTMLGYSMFIAQSLIYGLIILVIVKRQGKSNLCQALCQCASFA
DLKFGPGTKLTVLDPNMNITSPAIELLPPSPKELCRAKKDFHNVTLVCLVYDFYPDHVSI
SWEVNGKERMNSVATDHAAQKNPKTKLYSMSSRLSVQQTEWTNIKNTFTCIVTFYNKDGY
KKIPRSFRYSPDKIPVRVYATVQFGYLMFLGKSLLYAAFVSIIVWKFKASKEKTLMTEEE
EIVDS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgttcacacttggtgtgctgttgttgctgcttctaggcactcgtgagaccttagctgta
caattgctacaggaaagatcctcagtaatggctactgctgggagtaccatgacttttcag
tgcaatatagatgcaaggtttagcatgagcagctatactatgcaatggtacaagcaagct
tatcatggtgctcctgtacaattccttatgatggagtatgaactggccacgaagaaaatg
agcattgccctggttaaagctgagaataagttcagcttgcacgtttcaaacctcacgctg
caggacggtggtgtttattacttgcactgtgccaatgccaacccagcacactttggagct
ggaacaaaactcactgtcttagatccaaatataagcatcacaaagcctgcctctgtcaag
gtgctcagtgtttcagaaaaggaaacatgtacaaagacaaatgtcacactggtgtgtgtg
gctaaaggattctaccctgaccatgtgaatgtgtactggactgatgataacggcaaccgc
tccactgatgttagtacagatgagatcgccacccgaaacggcagtttctacagcatcacc
agcagactgaatatcaactacaaaacagaatggactaaaggcttaacattcacctgtaat
gttgttttttttgatggcacagaatactcaacacactctgactctgaaacaggaccaaaa
attgagagcgatggagaatatgcggctgaaacgtatgttcgaaaagtgaaaacaactatg
ttgggttacagcatgttcattgcacaaagtttgatatacggcttaatcatcttggtcatc
gttaagagacagggcaagtcaaatttatgtcaggccttgtgtcagtgtgccagctttgct
gacttgaagtttggccctgggacaaaactaacagttttggaccccaacatgaacatcacc
agtccagcaatagagttgctgccaccttccccgaaagagctctgcagagccaagaaagac
ttccataatgtaaccttggtgtgtttagtctacgacttttatcctgatcatgttagcatt
agctgggaagtgaacgggaaagagagaatgaatagtgttgcaacggaccatgccgcccaa
aaaaatccaaaaaccaaactttacagcatgtccagcagactgagtgtccaacaaactgag
tggaccaacattaaaaacactttcacttgcattgttactttctacaataaagatggctac
aagaagattccacgcagcttcagatattccccagataaaataccagtgagggtgtatgct
acagtgcaatttggatacttgatgtttcttggcaagagtctactgtatgctgcatttgtc
agcattatagtgtggaaattcaaggcttcaaaagaaaagaccctgatgactgaagaggaa
gagattgtagacagctaa
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