Silurus meridionalis (southern catfish): 124389677
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Entry
124389677 CDS
T08004
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124389677 (pdzrn3b)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124389677 (pdzrn3b)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
124389677 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
Sina_ZnF
Prok-RING_4
TRAF3_RING
zf-TRAF
zf-rbx1
PDZ_Tricorn
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
124389677
NCBI-ProteinID:
XP_046711054
LinkDB
All DBs
Position
1:11611346..11694379
Genome browser
AA seq
1047 aa
AA seq
DB search
MGFELERFSGAVDPDLKCNLCHKVLEEPLTTPCGHVFCAACVLPWVAQQRSCPAQCRRRV
SAQELHHVPPLKSLVLKLDIRCEHHARGCRQVVKLQHLAEHVETCEFAPARCRNEGCIQV
LNFKDLHLHMRDACEYRPAGVCEQGCGLGITHRERFLDGHCCVRALKAHNGALQAKLANL
EKECRKQAMRASKREKSLFAQLSSVHSELQLTAIRYQKKFTEYSARIDALKSFAPTAKGG
ESKSVSLVLHRESGSLGFNIVGGRPCVDNEDGTSNEGIFVSKIVEHGPVDKEGGLKIHDR
IMEVNGKDLSNATHEQAVEAFRTAKEPIMVHVLRRAPKPKLAGSDLDAQMTDISTQTDIT
FQHIMALSKLPAATLPVLDQYMLPEGHSPGHEYFDPNDYLETMQQDMEREELEYEEVDLY
RTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAARDGRIREGDRIIQINGIEVQNREE
AVALLTSEENRNVCLLVARPEIQLDDGWMEDDRNDFLDDLHMDMLEQQHNQAMQFTASML
QQKKPVKSGGMMDTGTLLSHQHEKDSGLGRTDESTRNDESSEQENICDDQTSASTTLGSH
RRLAYSQDTLGSSDLPFSNESFISADYTDADFLGDFPADECERFRELLELKCQVKSGGGL
SISWPSFGVDGGQGLCGAGDDGVDKELELLNAELRNIELECLSIVRAHRTQQLREQPWML
HNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRR
ANEGLAEASAGGTGTGPSTRVLRPLLSPVQEATGSSRIHTAPSKEPDAGHHSEAKDRKPS
RLSHPHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQVSLASICRDPASAEPKGEWK
VKIRSDGTRYITKRPARDRLLKERALRIREERSGGMTTDDDAASELKMGRYWSKEERKQH
AVRAKEQRQRREFMKQSRTDWLKEQSGSGADDKKEVNIIELSHKKMMKKRNKKIFDNWMT
IQELLTHGARSPDGTRVYNSLLSVTTV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagttggagcggttcagcggcgccgtggacccggatctgaagtgcaacctc
tgccacaaagtgctggaggagccgctgacaacgccgtgcggccacgtcttctgcgcggcg
tgcgtgctgccttgggtggcgcagcagcgcagctgtccggcgcagtgccggcggcgcgtg
tccgcccaggagctgcaccacgtgccgccgctcaagagcctcgtgctcaagctggacatc
cgctgcgagcatcacgcgcgcggctgccgccaggtcgtcaagctccagcatctcgccgag
cacgttgagacgtgcgagttcgccccggcgcgctgccgcaacgagggctgcatccaggtg
ctcaacttcaaggacttgcacttgcacatgcgcgacgcctgcgagtaccggccggcgggc
gtgtgtgagcagggctgcgggctcggcatcacccatcgcgagcgcttcctggacggccac
tgctgcgtgcgcgcgctcaaggcgcacaacggcgcgctgcaagccaaactcgccaacctg
gagaaggagtgtcggaagcaggcgatgcgcgcgagcaagcgcgagaagtcactgttcgcg
cagctctcctccgtgcacagcgagctgcaattgacggcgatccgctaccaaaagaaattc
accgagtacagcgcgcgcatcgacgcgctcaagagctttgcgcctacagcaaagggtggc
gagagcaaaagcgtctcacttgtgctccacagagaatctggatctttgggctttaatatt
gttggaggccgaccatgtgtggataatgaagacgggacttcaaatgaaggtatctttgta
tcaaagattgtggaacatggaccagtggataaagaaggagggcttaagattcatgacaga
ataatggaggtaaatggcaaagacctttccaatgctactcatgagcaggcagtagaggcc
ttccgcacagccaaagagcccatcatggtgcatgtgttgcgcagggcaccgaagcccaag
ttggcaggatctgatttggatgcacagatgacggacatcagcacgcagacagacatcacc
ttccagcacattatggccctcagcaagctgcctgccgcgacacttcctgtacttgatcag
tacatgctacctgaagggcactctcccgggcatgagtatttcgacccgaatgattaccta
gagaccatgcagcaggatatggaaagagaagaacttgagtatgaggaagtggatttgtac
aggacaaatatccaggacaagctgggcttaaccgtgtgctacaggactgacgatgaggac
gaaaccggtatatacgtcagtgagattgatccaaacagcattgctgcaagagatggccga
attagggaaggagacagaatcatccagatcaatggcatcgaggtgcagaatcgggaggag
gcggtggctctgctcaccagtgaagagaaccggaatgtatgtctgctggtggctcgacca
gagatacagctggacgatggatggatggaagacgacagaaatgatttcctggacgatctg
cacatggacatgctcgagcagcagcataatcaggccatgcagtttactgccagcatgctc
caacagaagaaaccagtgaagagtggaggcatgatggacacaggaacactgctgtcacat
cagcacgagaaggacagtggcctgggacgcaccgatgaaagcacccgcaatgatgagagc
tcagagcaagagaacatctgcgatgaccagaccagtgcctctaccacgctgggcagccac
agacgcctggcatacagtcaggacacactggggagcagtgaccttcctttcagcaacgaa
tcctttatctcagctgactacaccgatgcagactttctgggtgactttccagctgatgag
tgcgagcgcttccgagagctgttggagctcaaatgccaggtgaagagtggtggtggcttg
agcataagttggcccagcttcggagtagacggcggacaaggactctgtggtgcaggagat
gatggcgtggacaaggagctggagcttcttaacgcagagctgcgaaacatcgaactagaa
tgcctgagcattgtgcgggctcatcgtacacagcagttacgcgagcagccatggatgttg
cacaacagtggctttcgcaactacaatacgagcgtagacgcacggcgccatgagctggct
gatatcagcgagctacctgagaagtcggacaaggacagctcaagtgcctacaatacagga
gagagctgccgcagcacaccacttacactcgagctctcaccggacaactcattacgcaga
gctaatgaagggcttgcagaagccagtgcaggaggtactggaacaggccccagcaccaga
gtcttaaggcccttgctatcacctgtccaggaggctactggctcaagcaggatccacact
gccccatccaaagagcctgatgctggccaccattccgaggccaaagatcgcaagccaagt
cgcctcagccatccgcactccccctacaaacatgcccacatcccagcgcatgctcagcat
tatcaaagctacatgcatttgattcagcaaaaatccgccgtagagtacgcacagagccag
gtgagtcttgccagcatttgccgggatccggcttcggccgagcccaaaggagagtggaag
gtaaagatccgcagcgatggtactcggtacatcaccaagaggccagcacgtgaccgcctg
ttgaaggagcgtgccctgcgtatcagagaggaacgcagtggaggcatgaccacagacgac
gacgccgccagcgagctgaagatgggtcgctactggagcaaggaggagcgcaagcagcat
gccgtgcgcgccaaggaacagcgtcagcggcgcgagttcatgaagcagagtcgcacagac
tggctgaaagagcagagcgggagtggcgcagatgacaaaaaggaggtcaacatcatcgaa
ctgagtcacaaaaaaatgatgaagaaacgcaacaagaagatctttgataactggatgacc
atccaggaactgctcacgcacggtgcacggtctccagacgggacccgggtgtacaactcg
ctgttgtcggtgaccacggtgtaa
DBGET
integrated database retrieval system
