Silurus meridionalis (southern catfish): 124389875
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Entry
124389875 CDS
T08004
Symbol
xpo1b
Name
(RefSeq) exportin-1 isoform X1
KO
K14290
exportin-1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03008
Ribosome biogenesis in eukaryotes
smeo03013
Nucleocytoplasmic transport
smeo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124389875 (xpo1b)
03008 Ribosome biogenesis in eukaryotes
124389875 (xpo1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124389875 (xpo1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124389875 (xpo1b)
03009 Ribosome biogenesis [BR:
smeo03009
]
124389875 (xpo1b)
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124389875 (xpo1b)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124389875 (xpo1b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124389875 (xpo1b)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
124389875 (xpo1b)
Pre-60S particles
124389875 (xpo1b)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
124389875 (xpo1b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124389875 (xpo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
mTOR_dom
Hydrolase_3
BspA_v
Motif
Other DBs
NCBI-GeneID:
124389875
NCBI-ProteinID:
XP_046711385
LinkDB
All DBs
Position
8:complement(24796534..24820888)
Genome browser
AA seq
1071 aa
AA seq
DB search
MPAVMTMLADHAARQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEHPDAW
TRVDTILEFSQNMNTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDAANV
EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQMLPL
NTNIRLAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRQLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
YKCLSENISAAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITTEIPQIFDAVFECTLNMINKDFEE
YPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYTL
LQNVAQEEAAAQSFYQTYFCDVLQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISM
TLNPATPMSNQAFIQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLV
QIKEFAGEDTTDLFLEEREASLRQAQEEKHKLQMSVPGILNPHEIPEEMCD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagttatgacaatgttggccgaccacgcagccagacagctgctggacttcaac
cagaaactggatattaatctcctcgataatgtggttaactgcttgtaccatggagtggga
ccgcagcaaagaatggcccaggaggtcctcacacatttaaaggagcacccggatgcatgg
accagagtggacaccatcttggaattctcccagaacatgaacaccaaatactatgctctg
cagattctggaaacagttattaaaacaagatggaagattctgcccagaaaccagtgcgaa
ggaattaaaaaatatgttgtcggcctcattatcaagacatcttctgatgcagccaatgtg
gagaaggagaaggtgtacattggaaaacttaacatgattttagttcagattttgaagcag
gagtggcccaagcactggcccacgtttatcagtgatatcgtaggggcgagccgcacgagc
gagagcctctgccagaacaacatgatcatcctgaagctgctcagcgaggaggtgtttgat
ttctccagtggacagatgacacaggtcaaagccaaacatctgaaggacagtatgtgtaat
gagttctcgcagatctttcagctctgccaatttgtgatggaaaactcccaaaatgctcct
ttggtacatgccaccttagaaacgctgctccggtttctgaattggattccacttggctac
atctttgagaccaaactcatcagcactttagtgtataagtttctgaatgtcccaatgttt
cggaacgtgacactaaagtgtctgactgagatcgcaggtgtgagtgtgagccagtatgag
gagcagtttgtcacattgttcactctcaccatgatgcaactcaaacagatgttgcctctg
aacacaaacattcgcctagcgtacgccaacgggaaggacgacgagcagaacttcattcag
aatctgagcctgttcctctgcacgttcctgaaagagcacggccagctcatagagaaaaga
ctcaacctgcgggagacacttatggaggctctgcactacatgctgctggtgtctgaggtg
gaggagactgagatctttaagatctgtctggagtactggaaccacctggccgcagagttg
tacagagagagtccgttcagcacttccacttccccgctgctctctggcagccagcatttt
gatgttccaccacgtaggcagctctatctacctgtgctttccaaggtgcgtctgctgatg
gtgagccggatggcaaaaccggaagaggtgctggtggtggaaaatgaccagggggaggtg
gtgcgggagtttatgaaggacacggactccatcaacctgtacaagaacatgagggagacc
cttgtgtatctgacccatctggattatgccgacaccgagcgtatcatgaccgaaaaactc
cataaccaggtgaatgggacggagtggtcctggaaaaacctgaacacactgtgctgggcc
atcggctcaatcagcggagccatgcacgaggaggatgagaagcgatttcttgtcactgtc
atcaaggacttgctgggattgtgtgagcagaagcgaggaaaagataacaaggccatcatc
gcctcaaacatcatgtacatcgtcggccagtacccgcgattcctgcgcgcacattggaag
ttcctcaagactgtagtcaacaaactgttcgagttcatgcacgagacccacgatggagtg
caagacatggcgtgcgacacgttcatcaaaattgcgcaaaagtgcaggaggcatttcgtg
caggtgcaggtcggcgaggtcatgccgtttattgacgagatcctcaacaatatcaacacc
atcatctgtgacttgcagccacagcaggtgcatacattctatgaggcagtaggttatatg
atcggtgctcagacagaccaggctgtacaggagcatctgatagagaagtatatgctgcta
cctaaccaggtgtgggacagcatcatccaacaggccaccaagaacgtagatattctgaag
gacccagagactgttaaacagctagggagcatcctgaagactaacgtgagggcctgtaag
gctgtgggacacccgtttgtcattcagctcggccgcatctacttggatatgctcaacgtc
tacaagtgcctcagtgagaacatctccgccgctatccagaccaacggtgagatggtgact
aaacagcctctaatcagaagcatgcgcacggtcaagagagaaacactcaaactcatctca
ggctgggtcagccgttccaacgatccacagatggtcggggagaacttcgttccacctttg
ctggacgccgtcctgatagattaccagcgcaacgttccggcagccagagagccggaagtc
ctcagcacgatggcaaccatcgtcaacaaactgggcggtcacatcaccactgagattcca
cagatcttcgacgctgtgtttgaatgcacgctgaacatgattaacaaagactttgaggag
tatccagagcaccgcacacacttcttttacctgctgcaggcggtgaattcccactgcttc
ccggcgttcctcgccattcccccagcacagttcaaactggtgctggactccatcatctgg
gcctttaaacacacgatgagaaacgtggctgataccggtctgcagattctctacacgttg
ctgcagaacgtggcccaggaggaggcagcggctcagagcttctaccagacatacttttgt
gatgttttgcagcacatcttctccgtagttacagacacgtcgcacacggctggtctgacg
atgcacgcgtctatcctggcttacatgttcaatctggtagaggagggtaagatcagtatg
acactgaaccccgcgaccccaatgagtaatcaggctttcatccaggagtacgtggccaac
ttgctcaagacggccttccctcatcttcaggatgcacaggtaaaggtgtttgtaacgggg
ctgttcagtctgaaccaggacatccctgcatttaaagagcacttgagagacttcctggtg
cagatcaaggaatttgcaggtgaggacactacagatttgttcctcgaggagcgtgaagca
tctctgcgccaggcccaggaggagaagcacaagctgcagatgtctgtccctggaatcctt
aaccctcacgagatccctgaggagatgtgtgactga
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