Silurus meridionalis (southern catfish): 124389973
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Entry
124389973 CDS
T08004
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124389973 (srrm1)
03015 mRNA surveillance pathway
124389973 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124389973 (srrm1)
03041 Spliceosome [BR:
smeo03041
]
124389973 (srrm1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124389973 (srrm1)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
124389973 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
124389973
NCBI-ProteinID:
XP_046711563
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All DBs
Position
8:complement(28151016..28167436)
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AA seq
803 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVLKKVDEERKDRENKEKAQSRSPKRRKSRSPPKRERKRSHS
RSPRRKPSPPVIPPPSPPVHKPELQPEPDQSESSKPEPLVQEASSTSLSSDLPSEAKLDS
VSEVPKEMSPEKPPKTEDKPKPRDRERERERDGRRDRPRHRTRSRSPRPRRRHRSRSRSY
SPRRKPSPRRRMSPRRRSPPRRPPPSRHRRSRSPARRRRSHSRSSSGSSSSRSPHKRPTK
RISVTPPRKQPRRTETSSSPSRRRRSPSGSNVRPAGRNESPSPAPKPRRSDLSESEEDKL
GKGAAADSVQQRRQYRRQNQQSSSETRSSSSSSEDEGPRRPGRGPPARNGDIRRRRSHSP
VSPRRRHRDASPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRYSP
SPLPTHKRRPSPSPAPPKRVSPRSSTSPPPPRSRRSPPMTTSSGRQGSPQGRYPPGGASP
PRRGQSPAHGRAIRRVSRTPEPRNTQRGSQSPRPMRRRSIHSRSASPDRFPVSSAAASGP
LKRPAAASASPSPSPARSASGSPPPLPLPPPAKKASSASPSPSPNKNSDVDGGKKKKKKK
EKKHKKEKKHKKHKKHKKEKGGAVATVPAGDGQENPRMEEEPESDQKKDSESEVEDSLDD
LEKHLREKALRSMRKAQLSPSQS
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagcgcggagcaggataaccgcttcagtaacaaa
cacaagaagttgctgaaacagctgaagttcgcagaatgtctggagaaaaaggtggacatg
accaaagttaaccttgaagtcatcaaaccatggatcacacagcgcgtcacggagatcctc
ggcttcgaagacgacgttgtggtcgagttcgtcttcaaccagctggaggagaagaatcca
gacggtaagatgatgcagataaacctgaccggttttctgaacgggaagaacgcccgcgag
ttcatgaaggacctctggcccttgctgctgagcgcccaggagaacatcgccgggatcccg
tccgcctttctcgagcagaagaaagaggagatcaagctcagacaggagtcactggcggtt
ttgaaaaaggtagacgaggaacggaaagacagagaaaacaaagaaaaagctcagtctcgg
agtcccaaacggagaaaatctcgttcacctccgaagcgcgaaaggaaacgcagccactct
cgctcgcctagacgtaaacccagccctcctgtaatccccccacccagtccacctgtccac
aaacccgagctccagcctgagcctgaccaatcagagagctctaaaccggaaccactggtc
caagaggcttcctctaccagcctgtccagcgatttgccgagcgaagcaaaactggattcg
gtgtctgaggttcctaaggaaatgtccccagagaaaccgccgaagactgaggacaaaccg
aagccaagggatagggagcgggaacgggagagagacggacgcagagatcgtccacgacac
cgcactcggtctcgctcaccccgcccccggagacgccaccgctcacgttccaggtcgtac
tcgccccggcgcaaaccaagcccaaggagacgcatgtcccccagacgcaggagtcccccc
agacgacctccaccttccagacatagacgcagccgctcacctgcccgcaggaggcgctca
cattctcgctcgtcctcaggcagctcgtcctcgcgctcgcctcacaagaggcccactaag
cgcatttccgtcacaccgcccaggaaacaaccacgccgcactgaaacctcttccagcccc
agcaggaggcgccgcagcccttcaggttcaaatgtgagacctgctggaagaaacgagtcc
ccgtctcctgctcctaaacccagacgatcagacctatcggaatcagaggaagataagttg
ggtaaaggggcggcggccgattctgtccagcagagacggcaatatcgcagacagaaccag
caatcatcctcagagaccagatcatcctcttcatcctcagaggatgaagggccacgtcgg
cctggcagaggtccaccggcaaggaatggcgacatcaggaggaggcgaagtcactcaccc
gtgtctcctaggagacggcacagggatgcgtcaccaagaaagagacgttctccgtctcct
cgacgtcatcgctctccttcccccagacgacgtcgttcaccatcccctccacccagacgc
aggtctccctcgccgcctccccgccgctattccccacccatccagcgccgctacagcccc
tcgcctcttcccactcacaagcgacgcccttctccatctcccgcccccccgaagcgcgtc
agtccccgctcgtccacttctcctcctcctccacgctcacgccgtagcccacccatgacc
acctcctcagggcgccagggcagccctcagggcagatacccgcccgggggggcctctccg
ccgcgccgggggcagtctcccgctcacggcagagccattcgcagggtctcgcgtacgcct
gagccacgtaacactcagagagggtctcagagcccacggccgatgagaaggcggtccatt
cattcccgctccgcctctccagatcgtttcccagtatcctcagcggcagcgtccgggcct
ctcaagcgtccggctgctgcatccgcatccccgtctccttctccagctcgctcagccagc
ggttctcctcctcctcttcctcttcctccaccagccaagaaggccagcagtgcctctcca
agcccctcccccaacaagaactcggacgtagacggtgggaagaaaaaaaagaaaaagaag
gagaagaagcacaagaaggagaagaaacacaagaagcacaagaagcacaagaaggagaaa
gggggcgctgtagcgactgtgccggcgggggacggacaggagaaccctcggatggaggag
gagcccgagtccgatcagaaaaaggattcagagagtgaagtagaggacagtctggatgat
ctggagaaacacctgagagagaaagctctgcgctccatgaggaaagcccagctgtctcca
tcccagtcctga
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integrated database retrieval system
