Silurus meridionalis (southern catfish): 124390025
Help
Entry
124390025 CDS
T08004
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124390025 (dicer1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124390025 (dicer1)
microRNA pathway
RISC loading complex
124390025 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
ResIII
Helicase_C
SWI2_SNF2
SLFN-g3_helicase
Cas3-like_C_2
SNF2-rel_dom
DSRM_2
Motif
Other DBs
NCBI-GeneID:
124390025
NCBI-ProteinID:
XP_046711656
LinkDB
All DBs
Position
8:complement(3084978..3115064)
Genome browser
AA seq
1905 aa
AA seq
DB search
MAGLQLVTPASSPVGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLIKELSHQIRQDDGRRTVFLVNTASSVVQQASTVRTHSDLRVGEYVENPASWTE
DTWEEQIKENQVLVMTCNIFLHMLSFGVLPLSQINLVIFDECHLAITDHPYQEIMKKCED
SPGSPRILGLTASILNGKCDPSDLEEKIQNLEKILRCNAETATDLVVLDRYATQPREVVL
DCGPYQDNSGLSERLLNELDDALHFLNDYNLSTHREDRDPTFISKQVLTDCRAVLTVLGP
WCADKAAGIMVRELQKYIKHEQTALNRKFLLFADTILRKLHALCEEHFSPASLDLKFVTP
KVIKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEVEVKEKPEANFP
SPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQLRNKQME
VEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARA
PVSNYIMLADSERTKAFEEDLKTYKAIEKILRNKCSKSAECKEYEVESILDDDNILPPYS
LRSDDGGPRVTVNTAIGHVNRYCARLPSDPFTHLAPKCKTAELKTGVYQSTLFLPINSPL
REPITGPPMPCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETS
VPGRPGSTKRRQCYPKAIPECLRGSYPVPEQSYYLYVIGMVLTTPLPDELNFRRRKLYPP
EDTTRCFGILTAKPIPHIPHFPVYTRSGEVTISIELLKSGFSLSSSQLELITRLHQYIFS
HILRLEKPALEFRPTEADSAYCVLPLNVVADSSTLDMDFKFMEDIEKSEARIGIPNTQYT
KQNPFIFRLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTK
YNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVP
ELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVQSLPPGFRYSNLD
FGWKKSIDSKSFISCPSTCTEDDDDDEEDDGDDDHCKIAVSSAVPDLTAQEDLSTVSSEP
IERAVSQENCNAPDVAPEMCAHRAQLSEEPGSPCERSRNLSNCLNCQLASDVSPQTTTSV
PSDEPQDGHECNPDGKSDFPDGRVKKPTSERWLACGTPTSTEAPSTASSSAQLQTVALPG
DCVKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLS
YMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSTTDKWDSDEAKE
DLANGKAAKDDFDDEDDVDDDEDLMWKEPKDEVNVEDDLEYYHEHIRFIDTMLIGSGAFG
KKFPLGVFPSEPSCDWKAPKKAMFPSDGNHDDFDYSSWDAMCYLDPSKAAEEDEFVVGFW
NPAEENCGAQTAKQCISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGL
KVLPVKKRIKWNTDGGDGEDEYGWLQIPARCMFEHPDAQRTLNHLISGFENFEKKINYVF
KNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRS
ALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEE
KEEDIEVPKAMGDIFESLAGAIYMDSKMSLETVWQVYYPMMRPLIEKFSANVPRSPVREL
LEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP
QHLADARIHTSPLVYLQPKPGIPKLCKNPPRAPNIWNGPLNNEIF
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggcaggactgcagctggtgacccctgcctcctctcccgtggggcctttcttcggcctg
ccgtggcagcaggaagctattcacgacaacatatacaccccaagaaaatatcaggttgaa
cttctcgaagcagctcttgaacacaacactatagtctgcttgaacacaggctcagggaag
acgtttatcgcagtacttcttattaaagagctctcccaccaaatccgccaggacgatggg
aggaggaccgtgttcctggtcaatacagcttcatccgtggttcagcaagcctccactgtg
agaacccattcggatcttcgggttggggaatacgtagagaatccggcatcatggaccgag
gacacttgggaagaacagataaaggaaaaccaggtgctcgttatgacctgcaacatcttt
ctgcacatgctgagctttggggtcttgccactctcgcagatcaacctggtcattttcgac
gagtgccacctcgcaataacggaccatccctatcaggaaataatgaagaaatgtgaggac
agtccaggctccccacgcattcttggtctcaccgcttccattctgaatggcaaatgtgac
ccctctgacctggaggagaagatccagaacctggagaagatcctcaggtgcaacgccgaa
actgccacagatcttgtcgtgctggacaggtatgctacccagcctcgagaagtggtgctg
gactgcggcccttatcaggacaacagcggtttgtccgagaggctcctgaacgagctggac
gacgcgctccatttcctcaacgactacaacttatcgacgcacagggaggatcgagacccc
accttcatctccaaacaggttctgaccgactgtagggccgtcctgaccgtgctcggcccc
tggtgcgccgacaaagccgccggcatcatggtgcgcgagctgcagaagtacatcaaacac
gagcagacggcgctgaaccgcaagttcctgctctttgccgacaccatcctgaggaaactg
cacgccctctgcgaggagcacttctccccggcgtcgctcgacctcaagttcgtcaccccc
aaagtgatcaagctgttggagatcctgcacgagtataaaccgttcgagaggcagcagttc
gagagcgtcgagtggtacaacaaccgcaaccaagacaactacgtctcgtggagcgactcg
gaggatgatgacgaggacgaggaggtcgaggtgaaggaaaagccagaggccaactttccc
tctcccttcaccaacatcctctgcggcatcatctttgtggagaggcggtacacggccgtg
gttttaaataggcttataaaggaagcagggaagcaagatccagagctggcctacatcagc
agcaacttcatcaccggccacagcattggcaagaaccagctccgcaacaagcagatggag
gtggaattcagaaagcaagaggaagttttgagaaaattccgggcgcacgagaccaacttg
ctgatcgccaccagtatcgtcgaggaaggcgtggatatcccaaagtgcaatctggtagtc
aggttcgacttgcccacagagtaccggtcctatgtgcaatccaaaggccgggcgcgtgct
ccagtctccaattacatcatgctggctgacagcgaacgcacaaaagccttcgaggaggac
ctcaagacttacaaggctattgagaagattctcaggaacaagtgttccaagtcggcggag
tgtaaagagtatgaggtggagtccatactggatgatgacaacatcctccctccgtattcg
ttacggtctgacgacggaggccccagggtcaccgtcaacacggcgatcggccatgttaac
cgatattgcgcaagacttcccagtgaccctttcactcacctggcacccaagtgtaagact
gcagagctgaaaacaggagtgtatcagtccacactctttctgccaatcaactctcccctc
agagagcccattactggacccccgatgccctgcgcgaggctcgccgagaaagccgtcgct
ctcgtgtgctgtgagaaacttcacaaaataggcgagctggatgatcatttaatgccggtg
ggaaaggagacggtgaaatatgaagaggagctggacttgcacgatgaagaggaaaccagc
gtcccaggaaggccaggctccactaagaggaggcagtgctacccaaaagctatcccagaa
tgcctgcgaggcagttaccctgtgccagagcagtcctactacctgtacgtgattgggatg
gttctgaccacaccccttccagatgagctcaacttccggcggagaaagctgtaccccccc
gaggacaccaccagatgcttcggcattctcacagctaaaccgatacctcatattcctcat
tttcctgtgtatacccgctccggggaagtgaccatctccattgagctgctgaagtcaggc
tttagcctgagctcgtcgcagctggagctcatcactcgcctgcaccagtacatcttttct
cacatcctccgcctggagaaacctgcactggagttcaggcccaccgaggctgactcggcc
tactgcgttctacctctcaacgtggttgcggattccagcacattggatatggacttcaag
ttcatggaggatattgaaaaatccgaagcgcgaatcggcattccgaatactcagtacaca
aagcagaacccatttattttcagactggaggactaccaggatgctgtcatcattccaagg
taccgtaatttcgaccagccgcatcgcttctacgtagccgacgtatacacggacctcacg
cctctcagtaaattcccttcgcccgagtacgagacgttcgccgagtactacaaaaccaag
tacaacctggacctgtctaacgtcaaccagccgctattagacgtcgaccacacgtcctcc
agactgaatcttttaacccctcggcacctgaatcagaaaggcaaggcgctccctctgagc
agtgcagagaagaggaaggccaagtgggagagcctgcagaacaaacagattttagttcct
gaactgtgtgccattcatccaatccccgcttctctgtggagaaaagccgtgtgccttccc
agcatcctctaccggctgcactgcctcctgacagccgaggaacttcgggctcagacggcc
atcgatgccggagtgggcgttcagagcctgccacccggcttcagatattcgaatctagac
tttggatggaagaaatccatcgacagcaagtccttcatttcctgccccagcacctgcaca
gaggatgacgacgacgacgaggaagacgatggcgatgacgatcactgtaaaatcgccgtg
agctcagcagtcccagatctcactgcccaggaagacctcagcacagtctcatccgagccc
atagagcgtgccgtctcgcaggagaactgtaacgcaccggatgtagcgccagagatgtgc
gcccacagagcccagctatcggaagaacccgggagcccgtgcgagcgctccaggaacctc
agcaattgcctaaactgccaactagcgagtgacgtatcgccacaaaccactacctcagtt
ccgagcgacgagccccaggacggccatgaatgtaacccagatgggaaatcggatttcccc
gatggacgcgtgaagaaacctacctcagagcgttggctcgcttgtggaacgccaaccagc
accgaagcaccttctacagcgtcgtcgtcggcacagctccagaccgtagcgttacccggg
gactgtgtgaaaactctgggccccaacccggggctcatcctgcaggccctgactctctcc
aacgccagcgatgggtttaatctggagcgtttggagatgctgggcgactcgttcctcaaa
cacgccatcaccacctacttgttctgcacttatcccgatgcccacgagggacggctctcg
tacatgagaagcaagaaggtcagtaattgtaacctgtaccgcctcgggaagaagaaaggt
ctgcccagtcggatggtagtgtccatcttcgatcccccagtcaactggcttcccccaggc
tacgtagtgaaccaggacaagagcaccactgacaagtgggactcggatgaggcgaaagaa
gaccttgccaacggaaaggccgccaaggacgactttgacgacgaggacgacgtggacgac
gacgaggacctgatgtggaaggagcccaaggacgaggtgaacgtcgaggacgacttggag
tactaccacgagcacatcaggttcattgacaccatgctgatcggctctggcgccttcggg
aagaagttccccctcggcgtgttcccgtcagaacccagctgcgactggaaagcgcccaag
aaggcaatgtttccctcggacggcaaccacgacgacttcgactacagctcctgggacgcc
atgtgttacctggacccgagcaaagcagccgaagaggacgagtttgtcgtgggtttctgg
aacccggccgaggaaaactgcggcgcccaaacggccaaacagtgcatctcgtacgacttg
cacaccgagcagtgcatcgcagacaagagcatcgccgactgcgtggaggccctgctcggc
tgctacctgaccagctgcggagagcgagccgcccagatgttcctctgctcgctcggcctc
aaggtgctgcctgtgaagaagaggatcaagtggaatacggatggcggcgacggggaagac
gagtacggttggctgcagatcccagcgcgctgcatgttcgagcacccggacgcccagcgc
actctcaaccacttgatctcgggctttgagaacttcgaaaagaaaatcaactacgtgttc
aaaaacaaggcctatctcctgcaggccttcacgcacgcctcctatcactataacaccatc
acagattgctaccagcggctggagttcctcggtgatgcgatactagactacctcataacc
aagcacctttacgaagacccgcgccagcactcccccggcgtcctgaccgacctgcgctct
gcgctcgtcaacaacaccatctttgcgtcgctcgcggtgaaatacgactaccacaagtac
ttcaaagccgtgtcgcccgagctgttccacgtcattgatgattttgtgcaatttcagctg
gaaaagaacgaaatgcaaggaatggactctgagcttcgccgatccgaagaagacgaagag
aaagaggaggatattgaagtccccaaagcaatgggggacatcttcgaatcactagccggg
gcaatttacatggatagcaagatgtcactcgagaccgtttggcaagtgtattatccaatg
atgaggccgctgatagagaaattctccgccaacgtccctcgctcgcctgtgcgagagctg
ctggagatggagccggagacggccaagttcagtccggctgagaggacgtacgatgggaag
gttcgcgtgacggtggaggtggtgggaaaggggaagttcaaaggagtcgggcgtagctat
cgcatcgctaaatcagcagcggcacggcgcgccctgcgcagcctcaaagctaatcaacct
cagcatttggcagatgcccgtatccatacatcaccactggtatacctccagcctaaacca
gggatccccaaactatgtaaaaatcccccccgtgccccaaacatttggaacggccctctg
aacaatgaaatattttga
DBGET
integrated database retrieval system
