Silurus meridionalis (southern catfish): 124390099
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Entry
124390099 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: latent-transforming growth factor beta-binding protein 2-like
KO
K08023
latent transforming growth factor beta binding protein 2/3/4
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
124390099
Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
124390099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
FXa_inhibition
EGF_3
EGF
hEGF
EGF_2
EGF_TEN
Plasmod_Pvs28
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
124390099
NCBI-ProteinID:
XP_046711766
LinkDB
All DBs
Position
8:19785287..19891954
Genome browser
AA seq
1774 aa
AA seq
DB search
MNRAWVLLVLSVGISLARTCDAWKVRAGGRERRDAAAASVHAAFEQLRARSLNGVPLDPG
RIMSHALDSQESPRSDTETKTGPADHAPLQEGDTGEAREKAGRIPRQTGRKVVSDRARSI
SKINTPERVDSIPAHPKRLTGPHVCGGQQCCSGWAVAPGTNRCIKPDCQPPCQNRGSCSR
PHTCVCRSGYQGPRCEEVAPEQVYIQTGTSRVLMPIQPETETTKHQSARRRPTERQASES
NPKTQTPKPPTGKVAHSSGTQVRRGSPEVPQQQTGAGQSHASRTVKRYPSSTAPITSNAL
PSVNGHNHVYTHNQNVAYSNGQQHASNNKVTPTGANLTANVDRIKIVFTPMVCRRICHGG
QCYNSCERGDQTTVYSENQGPPTKTHGFRLFFCQIPCFNGGRCIGQNECWCPSNSTGKFC
HLPIPTPNKPSTGRQTNNKGVQSPSSHSVYTLPLSNQQASLLPSLVNVHVQHPPEAQVQI
HQVARVKPGQTTETGHSVQQRSQPGNNHINGNVNGQNSVHSTGQNHGQNHHRPHIRPNGH
VGRCFQETVDGKCGKPLPGLTKQEDCCGSVGASWGLHKCTECPSKPAYAVIANGLVECPK
GYKRLNSTHCQDINECLIPGLCKHAECLNTKGSYRCTCKPGYMLDASRSQCVSDKAVSME
QASCYRSILPGSCSHPLAQKITKQICCCSRVGKAWGSGCERCPLPDTDHFKEICPAGHGY
TYSRSDVQITLRELEEEELTEIDSILSQNPIYPEPPQTLPETPHQQPLPPVYPESPSPPV
TFLRVANSPTIPSSYPDIMEVTSNSPTYLMPDLENRDTAPINVATQVTDIDKCSLTPTIC
GPGQCVSVQTGYTCYCDPGYTLNALQTTCIDVNECENDPCGGKGHCVNTFGSYTCQCFPG
YSLLMTQNRKSCHDINECAMPNKCPSGHCINTEGSFTCECRSGFTKNQRGECEDVDECRS
PGVCPSGKCVNTRGSFKCQACGPGFRPDAGRCLDINECQMAAVCTNGQCLNTEGSFTCSC
NHGYEATSDSKGCQDVDECLLPDVCAQGTCVNVPGSHRCSCNTGYQSSPDGKACVDVDEC
AEPSLCMRGVCVNTYGSFTCTQCEVGYTLSDDRQRCEDIDECHSLSACPNGVCLNSEGSY
SCINCPTGFTVSPDGELCTDIDECQAPDICPMAACTNSEGSYSCMTCESGYKVSSDRHTC
EDIDECEDKAACLNGKCTNTAGSYHCGCTPGFQLLNSVCKDIDECEDEMICSKHGYCENT
NGSYYCHCDQGYDNTPDGQGCVDADECKLSSELCGEAHCENVEGSFLCLCPTDDEEFDPI
TVQCKPQSTGQDLPVPPHGASDDEQRDCYYNLNDVNFCQNVLSGNVTKQECCCTVGAGWG
DNCNIHPCPQDGQAEYIELCPHGSGILPIMTSVQGISHLLSRDADECELYGTEICKNGYC
ANVYASYNCYCHSGYYYDNVRMECVDDDECKEENQCEHGECVNTPGSFNCFCNPPLILDE
TQRRCISANSTEGPFLDEDYIHTDVCWXELKPDTTCINPMFGTLTTYTECCCLYGVAWGS
QCAFCPEKSSEDFAILCNLQNRGSDSLREHPGFEYGPDTPPEGHNGPPYWGNYGVLGGGT
FYGPEGTLSGSIFTDRSNDYGSREGGRVPVLRPREHQPTHRVNPYRDHSAGFEGLQAEEC
GILNGCENGRCVRVREGYTCDCFDGYELNLGKMACIDINECEDISDKVELCKNGVCTNTE
GSYKCTCLPGFLASSKPHECIPEDQGSVSHTVGN
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcgcgtgggttttgctcgtgctgtcggtcggcatctcgctcgcgcgcacgtgc
gacgcctggaaggttcgcgcaggtggccgcgagcggagagacgcagccgccgcctccgtg
cacgccgccttcgagcagctgcgggcaagaagcttgaacggagttcctttagatccggga
cgcatcatgtcccatgcactcgactcgcaggaaagtccccgatcagacaccgagaccaag
accggcccggcggatcatgcaccgctgcaggagggggacacgggagaagcccgagagaaa
gccggtagaatcccgaggcaaactggcaggaaggtggtttctgacagagcgaggagcatc
agcaaaatcaacacacctgagcgcgtggacagcattcctgctcatccaaagcgcctcact
gggccacatgtgtgtgggggtcagcagtgctgttcaggatgggctgttgcacctggaaca
aaccgctgcatcaaaccggactgccagcccccatgtcaaaaccgtggctcgtgcagtcgc
ccacatacctgcgtgtgccgctcgggttaccagggaccacgctgtgaagaggtggcacca
gagcaagtttacatccaaactggcacatccagagttctaatgcccatccagcctgaaaca
gaaaccactaagcatcagtctgcccgcaggagacccactgagagacaagcaagtgaaagc
aatcccaaaacccaaacaccaaagccgccaactggcaaagtggcccattcatctggaacc
caggttagacgtggttctcctgaggttccacagcagcagactggtgcaggacagtctcat
gcctccaggactgtcaagcgttatccttcatctacagcacccataacctcgaacgctctg
cccagtgtgaacggacacaaccatgtatacacacacaatcaaaatgtcgcctactctaat
ggccagcaacatgcctccaacaataaagtaactccaacaggagcaaacctcacagctaac
gtggaccgaatcaagatcgtctttacacccatggtgtgtaggaggatctgccacgggggg
caatgttacaatagttgcgagcgtggagatcagaccacggtgtacagcgaaaaccagggc
ccgccgaccaaaacccacggcttcagactctttttctgtcagattccgtgctttaatgga
ggacggtgtatcgggcaaaacgaatgctggtgcccatcaaattccacaggaaagttctgt
caccttccaattccaacccccaataaaccctccaccggccgacaaacgaataacaaagga
gtacagagtccctcatctcactcagtctacaccttgcccctgtccaaccagcaagcctcc
cttttaccctcgttggtaaatgtgcatgtccagcacccaccagaggctcaggttcagatc
catcaggttgcacgggtcaaaccgggccaaaccactgaaacagggcactcggtacaacag
cgctctcagcctggcaataatcatatcaatggcaatgtcaatggacaaaacagtgtgcac
agcactggtcagaaccatggccagaaccaccacaggccacatatcaggccaaatggacat
gtgggaaggtgtttccaggaaacagttgatggaaagtgtgggaagcctctgccaggtctt
accaagcaggaagactgctgcggcagtgtgggagcgtcatggggtctgcacaaatgcacc
gagtgccctagcaaaccagcttacgccgtgattgcaaatggcctcgtggaatgtcccaaa
ggctataaaagactaaattcaactcattgtcaagatatcaacgagtgtctgattcctggg
ttgtgtaaacacgctgagtgtctaaacactaagggcagctacaggtgcacatgtaagcct
ggatacatgctggacgcttcacgcagtcaatgtgtctcggataaagcagtgtctatggag
caagcctcgtgctaccgatccattttaccaggttcatgcagccatccgttagcccagaaa
atcaccaagcaaatctgctgttgcagccgagtgggaaaggcctggggatcaggctgtgag
aggtgccccttacctgacacagatcactttaaagagatctgtccagcaggccatggttac
acatactctcgctcagacgtccagatcacacttcgcgagctggaagaagaggagctcaca
gaaatcgactctatcctttctcagaaccccatataccctgagccacctcagactctgccg
gagacacctcatcaacaaccgctaccacctgtttaccccgagagcccgtctccaccagtc
accttcctgagggtggcaaattcgccaactataccttcttcatacccagatataatggag
gtcacctctaattctcccacctatctaatgccagacttggagaatcgtgacacggcacca
attaacgttgcaactcaggtcacagacattgacaagtgttcgctgactccgacaatctgt
ggtccaggccagtgtgtgtcagtgcagaccggctacacttgctactgtgacccaggctac
accctcaatgctctgcagaccacctgcatcgatgtaaacgaatgtgagaatgatccatgt
ggaggaaagggtcactgtgtgaacacttttggctcctatacctgccagtgcttcccgggc
tacagcctgctcatgacacaaaacagaaaatcatgtcacgacataaacgagtgtgccatg
cccaacaaatgtcccagtggccactgtatcaacaccgagggatcctttacgtgtgaatgc
agaagtggctttaccaaaaaccagagaggagagtgtgaagatgtggatgagtgcaggagc
cccggagtctgtcccagtggtaaatgtgtgaacacacgcggctcgttcaagtgccaagca
tgtggccctggattcaggcctgacgctgggagatgtctggacataaatgagtgtcagatg
gcagctgtgtgcactaatggtcagtgtttgaacacagagggctccttcacttgttcatgt
aaccatggatacgaagcaacttctgacagtaaaggctgccaagatgtggacgagtgtctg
ctaccggacgtctgcgctcaaggcacatgtgttaatgttccgggctcacacaggtgcagc
tgtaacacaggttaccaaagcagtcctgatggaaaagcttgtgtggatgttgacgaatgt
gctgagccaagcctttgtatgcgaggtgtgtgtgttaacacgtatggttccttcacctgt
acccagtgtgaggttggatacactctctctgatgacagacagaggtgtgaggatatagat
gagtgccactcgttgtctgcgtgcccaaatggagtctgtctgaactcagagggctcgtac
tcctgcataaattgccccactggtttcacagtttcaccagatggagagctgtgtacagat
attgatgaatgtcaggctcctgacatttgtccaatggctgcttgtacaaactctgaaggc
tcatattcctgcatgacctgtgaatctggctacaaggtctcctcagaccggcacacgtgt
gaagatatcgatgaatgtgaggacaaggcagcatgtctgaatggaaagtgtacaaacaca
gccggctcctaccactgtggctgcactccagggtttcagctattaaactctgtctgcaaa
gatattgatgagtgtgaggatgagatgatctgcagcaagcatggttactgtgagaatacg
aacggctcctattattgtcattgtgaccaaggatatgacaatacacctgatggtcaaggc
tgtgttgatgcagatgaatgtaaattaagttctgagttatgtggggaggcacattgtgag
aacgtagagggaagcttcctgtgcctttgccccactgatgatgaggaatttgaccccatt
actgtgcagtgcaaacctcaatctacaggacaagaccttcctgttcctccccatggagcc
tctgatgacgaacagagagattgctactacaaccttaacgatgtcaacttctgtcaaaat
gtgctctccggtaacgtcacaaagcaggaatgctgctgcactgtgggagcaggatgggga
gacaactgcaacatccacccatgcccacaggatggacaagcggaatatattgagctgtgt
cctcatggcagtggcattctccccattatgacctcagttcaaggcatcagtcatctcctg
agtagagatgcagatgagtgtgagctgtacggcacagaaatttgcaaaaatggttactgt
gcaaatgtctacgcctcatataactgctactgtcacagtggctattactatgacaatgtc
cgaatggaatgtgttgatgatgatgaatgtaaggaggaaaaccagtgtgaacacggagag
tgtgtgaacacacccggctcttttaactgcttctgcaatcccccactgattctggatgaa
acacagcgtcgctgcatttctgccaacagcacagagggtcctttccttgatgaggattat
attcacacagatgtctgctggncggaacttaaacctgataccacatgtattaatcccatg
tttggtactttgactacctacactgagtgttgttgtctctacggtgttgcctgggggtca
cagtgtgctttctgccctgaaaaatcatccgaggattttgctatattgtgtaacctgcaa
aacagaggctcagacagcctacgggagcatccaggctttgaatatggacctgacacccct
cctgaggggcataatggtccaccatactggggtaactatggcgttttgggaggtggcact
ttctatggacctgaaggcactttgagcggttccatctttactgatcgctcaaatgactat
ggctctagagagggaggacgagtacctgtgctcaggcccagagagcaccagccaactcac
cgagttaacccgtacagagatcatagtgcaggatttgagggtttgcaagcagaagaatgc
ggcatcttaaacggctgtgaaaatggccgatgtgtccgtgtgcgagagggctacacttgt
gattgctttgatggctatgaactaaacctaggcaagatggcatgtattgatataaacgaa
tgtgaggatataagtgacaaagtggagctgtgtaagaatggagtgtgtaccaacacagag
ggctcatacaaatgcacctgcttgccaggctttctggcttcttctaagccccatgagtgt
atcccagaagaccaaggctctgtctcccacactgtgggaaattga
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integrated database retrieval system
