Silurus meridionalis (southern catfish): 124390127
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Entry
124390127 CDS
T08004
Symbol
aqr
Name
(RefSeq) RNA helicase aquarius isoform X1
KO
K12874
intron-binding protein aquarius
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124390127 (aqr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124390127 (aqr)
Spliceosome [BR:
smeo03041
]
Complex B
Other components
Prp19-related factors
124390127 (aqr)
Complex C
124390127 (aqr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
ResIII
AAA_30
DEAD
UvrD_C_2
SLFN-g3_helicase
AAA
UvrD-helicase
AAA_16
AAA_22
PhoH
DnaB_C
nSTAND3
NB-ARC
Motif
Other DBs
NCBI-GeneID:
124390127
NCBI-ProteinID:
XP_046711809
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All DBs
Position
8:complement(18576056..18613889)
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AA seq
1470 aa
AA seq
DB search
MMEKDARVKKIAAPSVEQINAEYVTQLSNKYWAPHAKNKLPFDSKVVEDIYQNEILKSKF
AIRKIMLLEFSQYLENYLWVNYCPEVSSNGYLMSICCIVNEKFRENVPAWEVFKKEPTHF
PYFFKCVMEACLTGEEFGLTLREQTVLLLFLDHCFNSLEVDIIREQVQQLISLPMWMCLL
PSRLQHELKKVPKLQKFWNLIKKNYDKMDPKSAEQAKKERTFLSALIKKFLSVLMVIPTS
GPISMEKVHYCERFIELMIDLEALLPTRRWFNTVLDDSHLVVNCHLSSLTKREKEGHLFC
QLLDMLKFYTGFEINDQTGNALTEKEMTTLHYDRITSLQRAAFAHFPELQDFSLSNVAAV
DTRESLTKHFGHLSSNTLHQVASYLCLLPELPEGNDTSYDKEILLELLVSRHERRISQIE
QLNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTY
EIRQDIEDVVLRMKPWQSEYGGVVFGGWARMAQTIMSFSIVEVAKPHIGETWPARVRADI
TLNLNVQHHIKTEWEGLRKHDVCFLITVRPTLPYGTRFDRRQPFGEQTGVVYVRGCEVQG
MLDDKGRVIEEGPDPKPKLRGDTRTFRVWLDPNQYQQDMTNSIQTGAEDPYETFNIIMRR
KPKENNFKAVLETIRHLMNTECVVPDWLHDIILGYGDPGSAHYSKMANQISSLDFNDTFL
SIDHLKSCFPGYTVKVTEDDPAKQVPPFRINFPVQDIKGKKRKANEEEEKTEENNTLIVE
PHVIPNRGPYPYNQPKRNNIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNL
YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNY
VLARRLELLREVARLQESLGVPGDVSYTCETAGHFYLYQIMSRWEEYTSKVKPKPGLEVN
VQDVAAHFPFHKYFSNAPQPVFKGQSYQEDIDIAEGCYRHIRKIFTQLEEFRAFELLRSG
LDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIETFIPLLLQN
PEDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTVDLDAQGRAR
ASLCNLYNWRYKKLGNLPHVQSQPEFQAPNPGFTYDFQLVNVQDFNGIGESEPNPYFYQN
LAEAEYSVALFMYMRLLGYPAERISILTTYNGQKHLIRDVINQRCANNLFFGQPNKVTTV
DRFQGQQNDYIILSLVRTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAF
NQLTAQPLQLHIRPQEYYNSTEVRSNEPDQVVKNMPEMANLVYNMYMHMIQRTQQYRQQQ
QQQILPPPRQVTTEEESDVDMKEEEEEQKDTRPEEESKEGVNKDETVQEEPEVKMELESV
VEEQHTEERAKMPEHPGRDSDSGDSEEDQP
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaaggacgcgcgggtgaagaagattgcggcgccttcagtggagcagatcaac
gccgaatacgttacacagctctcaaataaatattgggctccacatgcaaagaataaactg
ccatttgattctaaggttgttgaagacatttatcaaaatgagattctcaaatcaaaattt
gcaatcagaaagatcatgctgctggaatttagccagtatttggagaattacttgtgggtt
aactactgcccagaggtctccagtaatggctatctgatgtccatctgctgcatagttaat
gagaagttcagagaaaatgttcctgcttgggaggtttttaaaaaggagcccacccacttc
ccgtacttctttaagtgtgtaatggaggcctgtctgactggagaggagtttggcttgact
ctacgggaacagactgttctgctgctcttccttgatcactgcttcaacagtctggaggta
gatattattcgagaacaggtgcagcagctcatttctctgcccatgtggatgtgcctcctg
ccgtcacgactccaacatgaactgaaaaaagtgcccaagctgcaaaagttctggaatctt
ataaagaagaattatgataaaatggacccgaagagcgctgaacaggccaaaaaggaacgg
acttttctttctgcacttataaagaagttcctgagtgtgctgatggtcatcccaacatca
ggcccaatctccatggagaaggtgcactactgtgagagattcatcgagctcatgattgac
ttggaggctcttctcccaacacgccgttggttcaacactgtgctggatgactctcacctg
gtggtcaattgccacctgtccagtctcacaaagcgagagaaagaaggtcaccttttctgc
cagctgctggacatgttgaagttctacacaggcttcgagatcaatgatcaaactggcaac
gctctcacagagaaggagatgaccactcttcactatgaccggataacttcactgcagaga
gctgcttttgcacactttcccgagctgcaggatttttctctctctaacgtagcagctgtg
gacactcgggagtcgctcaccaaacattttggtcatctcagttccaatacccttcaccag
gtggcatcatacctgtgccttttacctgagcttccagaaggaaatgacacctcttatgac
aaagagattcttttagagctactggtgtcgcgtcatgagcgacgaatctcacagattgaa
caacttaaccagatgcctctttatccaaccgagaagataatctgggatgagaacatcgtc
cccaccgagtactactctggagaaggttgcttggctctgccgaagctcaacctgcagttt
ctgactcttcatgattacctgttgagaaacttcaacctcttccgactggagtctacctat
gagatcagacaggacatagaagacgttgtgctgcgaatgaagccatggcaatcagaatac
ggtggcgtggtgtttggtggatgggccagaatggcacagactattatgtccttctccatt
gttgaagtagcgaagcctcacattggagagacctggcctgctcgagtccgtgctgatatc
actctgaacctcaatgtgcaacaccacatcaaaactgagtgggaaggtttgcgtaagcat
gatgtttgttttctgatcacggtgcgacccaccctgccgtacggcacacgctttgaccgg
cgccagccctttggggagcagacaggcgtggtgtacgtgaggggctgtgaggtgcaaggc
atgctggacgacaaaggccgggtcattgaggaaggtcctgatccgaagcccaaactgaga
ggtgacacaagaactttccgtgtgtggctggacccgaatcagtaccaacaggacatgact
aacagcatccagaccggtgctgaggacccctacgagacgttcaacatcatcatgagacgc
aagcccaaggagaacaacttcaaggctgtgttggagactatacgccacctaatgaacact
gagtgtgttgtccccgattggctgcatgatatcatcctgggatatggtgaccctgggagt
gcccattactccaaaatggcaaatcagatctcatccctggattttaacgataccttcctg
tctattgaccatcttaagtcctgtttccctggttacacagtgaaggtcacagaagatgac
ccagccaaacaggtccctccattcagaataaacttccctgtacaggacatcaagggaaag
aagcggaaagcaaacgaagaagaagagaaaacagaggaaaataacacactgatagtggaa
ccgcatgtgataccaaaccggggaccatatccctacaaccaacccaaacgaaacaacatc
cagtttaccccaactcagattgaggctattcgtgcaggaatgcagccgggcctcaccatg
gttgtaggtcccccaggtacaggcaaaacagacgtcgctgtgcagatcatctccaatctg
taccacaacttccccgagcagagaactctcattgtgactcactccaatcaggcactgaac
caactttttgagaagatcatggccctggacatcgacgagcggcacctcctgcgtctgggc
cacggagaggaggagctggagactgaaaaggatttcagcagatacggacgagtgaactat
gtactggctcgacgactggagctgctcagagaggtggctcgcttgcaggagagtctcggt
gtcccgggtgatgtgtcgtacacctgtgaaacagctggccatttttacctttatcagata
atgtcacgttgggaggaatacactagcaaggtcaagcccaaaccgggcttggaggtcaac
gtgcaggatgtggctgcgcactttccttttcataagtacttctcaaatgcaccccaacct
gtatttaagggccaaagctaccaggaggacattgacattgcagaagggtgctaccgtcac
atccggaagatcttcacccagctggaagaatttagggcctttgagctgctgcgcagtgga
ctggacagatcaaaatatctgctggtgaaggaggcaaaaattattgcaatgacctgcact
cacgctgctctcaaacggcatgatctcgtggagctcggcttcaagtatgacaacatttta
atggaagaagcagctcagatcctggagattgaaacatttattccactgctacttcagaac
cccgaggatggctacagtcgtctgaagcgctggatcatgattggtgatcatcaccagctc
cctcctgtcattaagaatatggcttttcagaaatattccaacatggagcaatctctgttc
acacgctttgtgcgattaggcgtgcccacagtggacctggatgcacagggccgagctcgt
gccagtctgtgtaatctgtataactggcgatataagaagcttggaaacctgcctcatgtt
cagagtcagccagagtttcaggcccccaaccctggttttacctacgacttccagcttgtc
aacgtgcaggatttcaatggaatcggggagtctgaacccaacccttacttctaccagaac
cttgctgaggcggagtactctgtggctctgttcatgtacatgcggctgttgggttaccca
gcagagcgtatcagcatcctcactacttataatggccagaagcacttaatccgagatgtc
atcaaccagcggtgtgccaacaacctcttctttggccagcccaacaaggtaacaacagtg
gacaggtttcagggtcagcagaatgactacatcatcctctcactggtacgcaccaaagca
gtaggccatttgagagatgttaggcgtttagtggtcgctatgtccagagccaggctgggc
ctctacatctttgctcgggtctcccttttccagaactgctttgagctgacacctgctttc
aatcagctgactgcgcagcctctgcagctgcacattcgaccacaagagtactacaactca
acagaggtgcgctcgaacgagcctgaccaggtagtgaagaacatgcccgaaatggccaac
ctggtctacaatatgtacatgcatatgattcagagaacccaacagtacagacagcagcag
cagcagcagattctcccacccccacggcaggtgacgacagaggaagagtctgacgtggat
atgaaggaagaagaagaagagcagaaagacactcggcctgaagaagagagcaaagaaggt
gtgaataaagatgagactgtgcaggaggagcccgaggtgaagatggagctggagtctgtt
gtggaagagcagcacacagaggaacgtgctaaaatgcctgaacacccaggtagagacagt
gacagcggggacagtgaggaggaccaaccctaa
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