Silurus meridionalis (southern catfish): 124390286
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Entry
124390286 CDS
T08004
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04140
Autophagy - animal
smeo04148
Efferocytosis
smeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124390286 (vps39)
04148 Efferocytosis
124390286 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124390286 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124390286 (vps39)
Membrane trafficking [BR:
smeo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
124390286 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
124390286
NCBI-ProteinID:
XP_046712081
LinkDB
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Position
8:15101653..15117600
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AA seq
905 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDDGWYQICLHFVVKTL
LCAIVLIVSSSSYQTATNRFEVLLEKSNKNFSKKIQQLYVVSQYKILVSLLENNIHVHDL
LTFQQITMVPKAKGATLFACDLQQSIAGEEKLRMCVAVKKKLQLYYWKDREFHELQGDFA
VPDIPKSMAWCENSLCVGFKRDYYLIRMDGRGSIKELFPTGKQLEPLVAPLADGKVAVGQ
DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSVELQ
RPRFITSAGPNIVYVASNHFVWRLVPVSIASQIRQLLQDKQFELALQLAKMKDDSDGDKK
QQIHHIQNLYAFNLFCQKRFDDSMQVFAKLGTDPTHVIGLYPDLLPSDYRKQLHYPNPFP
TLSGAELERAHLALIDYLTQKRSHLVKQLNDSDPSTTSPIMEGTPTIKSRKKLLQIIDTT
LLKCYLHTNVALVSPLLRLENNHCHVEESEYVLKKAHKYSELIILYEKKGLHQKALQVLL
DQSTKANSPLKGHERTVQYLQRLGAENLGIIFEFSPWVLKVCPEDGLKIFTEDLTEVEML
PRDKVLDFLKDGFKELAVPYLEHIIYVWEETGPEFHNVLIQLYLERVQSLMKEYLNSLPE
GVPAVPAGKEEGELGEIRNSLLSFLNISIYYEPDILISDFPFDGLLEERALLLGRMGKHE
QALFIYVHILNDTYMAEEYCHRHYDKSADGNKDVYLSLLRMYLSPPDAHYLGPIKMELSE
PQANLQAALQVLELHHSKLNTTKAIDLLPANTQIAEIRVFLESVLEEKAQRKRFDQVLKS
LLQAEFLRVQEERIFHQQVKCVITEEKTCRVCKKKIGNSAFARYPNGVVVHYFCCKDRSV
CPIEQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctacgagcccgtccctattttggagaaacttcctctccagatcgactgt
ttagcggcctgggaggattggctcctggtggggactaaaccaggtcatctcctcctttac
aggatcaagaaggatgacggttggtatcagatttgcttgcattttgttgtgaaaaccttg
ttgtgcgccattgttttgattgtatcatcttcctcctatcaaacagccacaaacagattt
gaagtgttactcgagaaatccaacaagaacttctccaagaagatccagcagctgtatgtt
gtatcacagtacaagattttggtcagccttctggagaacaatatccatgtccatgatttg
ctcactttccagcagatcactatggtacccaaagccaagggtgcaacactctttgcctgt
gatctgcagcagtctattgcaggtgaagaaaagttgcgcatgtgtgttgctgtcaaaaag
aaacttcagctttattactggaaggacagggagttccatgaactacagggggattttgcg
gttccagatattccgaagtccatggcttggtgcgaaaattccctgtgtgtgggattcaag
cgtgactactatctgatccggatggatgggcgtggatcaattaaagagctcttcccaaca
ggaaagcaactggagcccctggtagccccactggccgatgggaaagtagctgtgggccag
gatgatctcactgttgttttgaatgaggaaggaatctgcacacagaaatgtgcccttaac
tggactgacatccctgttgcaatggagcaccagcctccatatattatagctgtgctgcca
cgttatgtggagattcgcacctttgaaccaaggttgttggtacagagtgtggagttgcag
aggccacgcttcatcacctctgcagggcccaatattgtgtatgttgccagcaatcatttt
gtctggcgacttgtgccagtttccatagcgagccagatccggcagctcctacaggacaag
cagtttgagctggctcttcagctagcgaagatgaaggatgactcagatggtgataagaaa
cagcagattcatcatattcagaatttgtatgcctttaatctcttctgtcagaagcgtttt
gatgactcgatgcaggtgtttgctaagctggggacagacccaactcatgtgattggattg
tatccagacctcctgccttctgactaccgtaaacagctgcattaccccaatcctttcccc
acactctctggagcagagctggagagggctcatttggctctcattgactacctaacacag
aagcgcagtcatttggtgaagcagctgaatgactctgacccctccaccacatcaccgatc
atggagggcacgcctacaatcaaaagccgcaagaagcttcttcagatcatagacaccacc
ttgctcaaatgctaccttcataccaatgtggccttggtgtcaccccttctgcgtctagaa
aacaatcactgtcatgtggaggagagcgagtatgtgctgaagaaggcccacaagtacagt
gagctcatcatcctctatgagaagaagggcttgcatcagaaggccctgcaggttttgctg
gatcagtctactaaagccaactctcctttaaagggtcatgagaggacagtgcagtatctc
cagagactgggggctgagaatctgggcattatctttgagttttccccatgggtgctgaag
gtttgtccagaggatggcctcaagatttttacagaagacctaacggaggttgaaatgctg
cccagagacaaggtgctagacttcctaaaggatggttttaaggagctagctgtgccatat
ctggagcacattatttatgtgtgggaggaaacaggccccgagttccacaacgtgctgatc
cagctttacctggagagagtacaatcgctgatgaaagagtatctcaattcactgcctgag
ggtgtcccagctgtgcctgcaggaaaggaggaaggggaactcggagagattcggaacagc
ttgttgtcgttcctaaatatttcaatatactatgaaccagatattctcatcagtgacttt
ccatttgatggtctgttggaggagcgagctctgcttctgggacgcatgggaaaacatgag
caggcactctttatttatgtgcacatactgaatgacacgtacatggctgaggagtattgt
cacagacattatgacaaatcagcagatggaaataaagatgtgtatctgtctctcttgcgc
atgtacctgtctcctccagatgcacactatctgggtcctattaagatggagctgtctgag
ccccaggctaatcttcaggctgccctccaggtccttgagcttcaccacagcaagctcaac
accactaaggcgatagacctgcttccagcgaacactcagattgcagagatccgtgtgttt
ctcgagagtgtgttggaggagaaagcccagaggaaacgttttgatcaggtgctcaagagt
ctgctgcaggcagagttcctccgggtccaagaggagcgaatctttcaccagcaggtgaag
tgtgtcattacagaagaaaagacctgccgggtttgtaaaaagaagattggaaacagtgcc
ttcgccaggtatccaaatggtgtagtagtccactatttttgctgtaaggatcgcagtgtg
tgtcccatagagcaatga
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