Silurus meridionalis (southern catfish): 124390495
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Entry
124390495 CDS
T08004
Name
(RefSeq) syndecan-1-like
KO
K06257
syndecan 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04512
ECM-receptor interaction
smeo04514
Cell adhesion molecule (CAM) interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124390495
04514 Cell adhesion molecule (CAM) interaction
124390495
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124390495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124390495
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
smeo04090
]
124390495
00535 Proteoglycans [BR:
smeo00535
]
124390495
Membrane trafficking [BR:
smeo04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
124390495
CD molecules [BR:
smeo04090
]
Proteins
124390495
Proteoglycans [BR:
smeo00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
124390495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
124390495
NCBI-ProteinID:
XP_046712422
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All DBs
Position
8:20019690..20030574
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AA seq
355 aa
AA seq
DB search
MRLLRESALVLFLCLWIPVEYSYGALAPEDQDGSGDDYEFSASGSGSGDDDFLIMPVVTT
QASPNTTKTAWFTNAPVHLPEHPVTQFVSPHTEPKTSGHDTEAPPSSTTQITETQTSPII
IKSLGSEEDQKSETTTVSAVTQPKTTLPPAEKLPVVPTHKEQYTTTAHDEEDTKESFVIE
EATSIVEAVSVTTKAPKMETTPALRSTSTASNSADIDASGDSVESTTMQAIEDNLIEIIP
KEHIPINRNPNPTMGNGDFGFDNEIQKPGTRSGQPGSESDFALGSASDNDSLLERKEVLA
GVIAGGVVGLAFAIMLVTLMVYRMKKKDEGSYSLDEHKHPNGGYQKPQKQEEFLA
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttcttcgtgaaagcgcgcttgttttgttcctctgcttgtggatacctgttgaa
tattcgtatggagctcttgcaccagaagatcaagatggatcaggagatgactatgagttc
tctgcgtcagggtcagggtcaggggatgatgacttcttgatcatgcctgttgtgacaacc
caagcaagtcctaacaccacgaagacagcatggttcacaaatgcccccgttcatcttcca
gaacatcctgttacccagtttgtctccccccacactgagcctaaaacatctggccatgac
acagaagctcctccatcatccaccacccagatcactgagactcaaacatctcctatcatc
atcaaatctcttggctcagaggaagatcaaaaaagtgagaccacaacagtaagcgctgtg
acgcagccaaagacaactctgcctccagccgagaaactacccgtggtgcccacgcataaa
gaacaatatacaaccactgcccatgatgaggaggacaccaaagaatcatttgtaattgaa
gaagctaccagtatagttgaagcagtgagtgtgacaactaaagcacctaaaatggagact
actccagcacttaggagtacatcaacagctagtaattcagctgatattgacgcttcaggt
gattctgttgaatccacaactatgcaagccattgaagataatctgattgaaatcataccc
aaggagcatatacctatcaacaggaatccgaatccaacaatgggtaatggtgactttgga
ttcgacaatgaaatccagaagccgggaacaagatcaggacaacctgggtccgagtctgat
tttgctctaggcagtgcttctgacaacgatagcttactggaaagaaaagaggtcctggca
ggtgtcattgcaggtggcgtggtgggcttggcttttgctatcatgcttgtcactctcatg
gtctaccgcatgaagaaaaaggacgagggtagttattcactagacgagcacaaacaccct
aatggaggctaccagaaaccacagaagcaggaagagtttctggcataa
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