Silurus meridionalis (southern catfish): 124390763
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Entry
124390763 CDS
T08004
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
124390763 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124390763 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
smeo04131
]
124390763 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124390763 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124390763 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
124390763 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
124390763 (si:dkey-110c1.10)
Membrane trafficking [BR:
smeo04131
]
Others
Actin-binding proteins
Myosins
124390763 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
124390763 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
124390763 (si:dkey-110c1.10)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
Myosin_N
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
124390763
NCBI-ProteinID:
XP_046712712
LinkDB
All DBs
Position
9:complement(1616822..1645202)
Genome browser
AA seq
1645 aa
AA seq
DB search
MASPELYTKGACVWVPDSEEVWVCAQLEQDYQPGDQQLTLKLSNRTVQYPVAPPAGLPPL
GNPDILEGENDLTALTFLHEPAVLHNLRVRFLHYNSIYTYCGIVLVALNPYEQLPIYGEE
VIDAYSGQDMADIDPHIFSIAEDAYRTMIREEKNQSIIISGESGSGKTVSAKFTMRYFAV
VGGAARQTSVEEKVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFGSKGDIIGAHMRTY
LLEKSRVVFQAPEERNYHIFYQLCASRDLPELRSLKLKTAEHFRYTNQGQNINISGTDDA
MELENTRNALTILGISPDQQMELFRILAGVLHLGNVHIQAIGRGGERSYISIDDQPLMVF
SKLMGVEGPQMAQWLCHQRLAVGGELLVKPLSAQKANEARDALAKHVYDQLFIWTVQRLN
LALRAHREQPKTFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFQLEQEEYER
EELPWNRIEFSDNQPCITLIEGSLGLLDLLDEECRIPKGSDENWARKLYDQHLNRSPNFR
KPRMSNAAFIVLHFADMVQYECDGFIDKNRDTIFEEPINIMRASQSELVAELFQQGSSGG
SVSASSLPESARAGKRAHREHKLTVAYQFRQSLQLLMDTLGSTTPHYVYCIKPNDLKQPF
MFDPNRAVQQLRACGVLETIRISAAGFPSRWTYEDFFSRYRVLLHRLSVGDLRESCRKEI
PALIPDPEQYCFGKTKIFFRAGQVALLEKLRAKRLRAAGVKIQSWVRRWIQRRRYLQLRR
AALILQRHTRGTLARRLAWTLRYTRAALVIQKTYRMVAARQNFLTSRKAAVTIQAFVRGM
QARRTYRLMLMERAAVCLQAWVRCWLARRRFRHVRAAVVLMQCCVRRRNARKELRKLRAE
ARSVERYRELNKGMEVKLMQLQLRADQQARESASLRETLNAERESHISEVNQLHLTLLKV
QKQLEEQSQAVPTLTAKQEEEKRRAEEIAAQEIHQLTQVIEALKVERNCLEKERDDLITR
LKELEKIQEESMQKSVAQAGAAVQAELEEERRRYQGLLREFTRLEQRYDNLRDMSMLPPA
EQRWFGPRRTDSTQSFSLDPTSPISPFFDNFPDFSSSDESRRISVSSMFDLKPGSTEAPL
NLLDDLGESKDTGATLQGEDLHLHVANKFMERQLLAQSPEWEQEKLVLTQQLQEAHTRDS
SVSKDLKEEMEKLDLRERESRSLNMALQEIKHAVRDKLLSAGLSKYQTMSQNTTQRSNLP
LTGLLECRKRDESRLIKNLITDVRADVALSLTPGLPAQLVFLCMRQADICRDEARVQSLC
VATVTGIKAALKKHSSDLDMTALWLKNAYLLKDLLTQHSSTTQETGRKLLPLQVELKEEE
RVLGNVCIQAYQQLLSISESHLQPIIVPAMLESDTIPGLSGAMVKLVTSRKRAGSDPRRA
GSPDETSMATLLRELGALHAALVRQKLPPALLDQAFRQLTHLLAACTLNSLVLRRDMCCW
NRGLVIRYNVSLLEEWLRSRGLQAGGAASTLEPLIQAAQLLQMSKKTEADGQSIVHTCNA
LSSQQVVKILSQYTPQSDAEERVTLKFIRIVQGLLKERPDGNQTALLLDVRRVFPVTFPF
TAPPPIISEQLLIPEALKINFLRRV
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcctgaactctacacgaagggagcgtgtgtgtgggtgccagattctgaagag
gtgtgggtgtgtgctcagctcgaacaggactaccaacctggagatcaacagctcacactg
aagctcagcaatcgcacagtgcagtaccctgtggcgccccctgctggtttgccccctctg
ggaaacccggatatactggagggtgaaaacgacctgacagcgctcacattcctgcacgag
cctgcagtgctgcacaacctgcgtgtgcgctttcttcactacaacagcatctacacttac
tgcggaatagttttagtggccctgaacccatatgagcagctgcccatctatggagaagag
gtgattgatgcatacagcgggcaagacatggctgatatcgaccctcatatcttctccata
gcagaagatgcctatcgtaccatgatcagggaggagaaaaaccagtccattatcattagt
ggtgagtcaggatctgggaaaaccgtctctgcaaaattcaccatgcgctacttcgccgtg
gttggaggagcagctcggcagaccagcgtggaggagaaagtcctagcctccaatcccatc
atggaggccatcgggaatgctaaaactactcgcaatgataacagcagcaggttcgggaag
tatattgagattggctttggatctaaaggagatataatcggagcacacatgaggacctac
ctcctggagaaatctagagttgtttttcaggccccagaagaaagaaactatcacattttc
taccagctttgtgcctccagagatctaccagagctgcggtcactcaaacttaaaactgca
gaacattttcgatacaccaaccaggggcaaaatataaacatttcaggcacagatgatgcc
atggagctggagaacactcgaaatgctttgactatcctgggaatttcacccgaccagcag
atggagctctttcggattttggcaggtgtcctccatcttggcaatgttcacatccaggcc
attggcagaggaggcgaacgtagctacatcagtatagatgatcaacctctcatggtgttc
tccaaactaatgggtgtggaaggtcctcagatggcccaatggctctgtcatcagcgtcta
gccgtaggtggggagcttttggtgaagccgttgtcagctcagaaggctaacgaggcgcgg
gatgctctggctaaacatgtgtatgaccagctgtttatttggactgtacaaagactgaac
ttggctctgagggcacacagagagcagcctaagacttttataggagtgctggacatctat
gggtttgagacgtttgaccgaaacagcttcgagcaattctgcattaattacgccaacgag
aaacttcagcaacagtttaacaggcacgtatttcaactggagcaggaggagtacgagcga
gaggagcttccctggaaccgtatcgagttcagcgataatcagccctgcatcacactcatt
gagggatctctgggtctcctggaccttctggatgaggaatgcagaattcctaaaggttca
gatgaaaactgggcacgaaaactctacgaccaacacctgaaccgaagccctaatttccgt
aagccgcgcatgtccaacgcagccttcatcgtgctccacttcgctgatatggtccagtat
gaatgtgacgggtttatagataagaatcgtgacacaatatttgaagagccaatcaatata
atgcgagccagtcagtctgagctggttgctgagttgttccagcaggggtcatctggtggc
tctgtgtctgcatcgtccctacctgagagtgcacgtgcgggaaaacgagctcatcgtgag
cacaaactcaccgtagcctatcagttccgccagtctctacagctcctgatggacaccctg
ggcagcaccacgcctcactatgtctactgcatcaaacccaacgacctcaaacagcctttt
atgtttgatcctaacagagcagtgcagcagctgcgagcgtgtggtgtgctggagacaatc
cgcatcagcgccgcaggttttccatccaggtggacatatgaggacttcttcagtcgttac
agagttctccttcatagattgtcggttggtgatttgcgagaatcctgccgaaaagaaatc
cctgccctcatccccgaccctgagcagtactgttttggcaagacaaaaatatttttccgg
gcaggtcaggtggccttgctggagaagctgagagccaagaggctgcgggcagcaggggta
aagatccagagctgggtgagacgatggatccagcgccggcggtacctgcagctacgtcgg
gctgctttgattttgcagagacacactcgaggaaccctggcccgcaggttggcttggacg
ctgaggtacacacgagctgcactggtcattcagaagacgtaccgtatggtagcagcgagg
cagaacttcctgacctccagaaaggctgcagtaacgatccaggcgtttgtcagaggcatg
caggctcggcgtacatacagactgatgctgatggaaagagcagcagtttgcctgcaggcg
tgggtccgatgctggctcgctcggcgtcggttcaggcacgttcgggctgcggtggtgctg
atgcagtgctgtgtgcgcaggagaaatgcacgtaaggagttgcggaagctgagagccgag
gctcggtctgtggagaggtacagagaactcaacaaaggcatggaggtcaaactcatgcag
cttcagctacgtgctgaccaacaggcgagagaaagtgcatctctgcgtgaaactctcaat
gctgaacgcgagtcacacatctcagaagtgaatcagctgcacttgactctgctcaaagtg
cagaagcagctcgaggagcagagccaagctgttccaactctcactgcaaaacaggaggag
gagaaaaggagagctgaggagatagcagctcaggagattcaccagctcacacaggtgata
gaagcgttgaaagtggagaggaactgtttggagaaggaacgagatgatctgatcacacgt
ttgaaggagttggagaaaattcaagaagagagcatgcagaagtcggttgctcaggccgga
gctgcagttcaggccgagctggaggaggagaggagaagatatcagggcttgctgagggaa
ttcactcgattagagcagagatacgacaacctgagggatatgagcatgctccctccagct
gagcagcgatggtttggacccagaagaaccgattccactcagagcttttctctggaccct
acttctcccatctctccattcttcgacaacttccctgatttttcttcttctgacgagagc
aggaggatcagcgtctcctcaatgtttgacctgaagcctggcagcacagaggcacctttg
aatcttttggatgatctgggagagtcaaaagacacaggagcaactctgcaaggagaagac
cttcacctccacgtggccaacaagtttatggagaggcagctgctggctcaaagccctgag
tgggagcaggagaaacttgttctcactcagcaactccaggaagcccacactagagacagt
tcagttagcaaagatctgaaggaggaaatggagaagctggatctacgggaacgggagagc
cgcagtctaaatatggcactacaggagataaaacatgcagtgagagacaaactactgtct
gcaggcctgtcgaaatatcagaccatgtctcagaatacaacacaacgctcaaacctgcca
ctgactggccttctggagtgtcggaagagagatgagagcagactgataaaaaacctcatt
acagacgtgcgagcagacgtggctctctccctgacgcccgggttgcctgcacagctcgtc
ttcctgtgcatgcgacaggcggacatctgcagggacgaagctcgagttcaaagcctctgt
gtggccacagtgaccggaatcaaagcagcgctaaaaaagcacagcagcgatttggacatg
acggctctgtggctgaagaacgcttacctgctcaaagacctgctcacccagcattcgtcc
accacacaggagacagggagaaaattgctccctctgcaggtggagctgaaggaggaggaa
cgagtgcttgggaatgtgtgtattcaggcctaccagcagctcctctccatctctgagagc
cacctgcaacccatcattgttccagccatgttggagagtgatactatcccaggcctgtct
ggagccatggtaaagctggtcacctctcgtaagcgggcagggtctgatcctcggcgtgca
ggatctccagatgagaccagcatggcgactcttctgagggaacttggagctctgcacgct
gcactggtgcgccagaagcttcctcctgccctgcttgaccaggctttccgccaactcaca
cacctgctcgctgcctgcacgctgaacagcctggtcctccgcagagacatgtgctgctgg
aaccgtggcctggtgatccgctataatgtgagtttactggaggagtggctgaggagtcgc
gggttgcaggcagggggcgctgcatccacactagagcctctgatccaggcagcacagctc
ctccaaatgagcaagaaaaccgaggctgatggacagtccatagttcatacctgcaatgcc
ctgtccagccagcaggttgtgaagattttatctcagtacactccacagagcgacgctgaa
gagagagtcacgctcaaattcattcgcatcgttcaggggctgctgaaggaacgtccagat
ggaaaccaaacagcacttctgctggatgttcggagggttttccccgtcacctttccattc
acagcacctccaccaatcatctccgaacagctgctgatcccggaagctctcaagatcaac
ttcttgcgcagagtctga
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integrated database retrieval system
