Silurus meridionalis (southern catfish): 124390795
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Entry
124390795 CDS
T08004
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124390795
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124390795
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124390795
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124390795
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Protocadherins
124390795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TM_ErbB1
CD34_antigen
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
124390795
NCBI-ProteinID:
XP_046712762
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All DBs
Position
9:complement(14250744..14255490)
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AA seq
885 aa
AA seq
DB search
MCNIRKGSCLFRERKFWGFWILLLYTSPLSCFSKFSHLVYKIKEGLPKGILIGSVSEDLK
LDFSVDPPRLFHLELRQSGSQYVNLSETTGDLYTSALEIDRETLCADSYEGQGCTISLDV
IILPQQYFQLVKIKIIIEDVNDNKPQFPVDEIRVSVPENAPVNARFVVEQSAVDPDIGIY
GVQTYWLANDFGVFTLDVEQNEGGELTPFLIITGPLDRETKAEYLTDFIAEDGGSPPFLG
TATLRIIITDVNDNCPKFSETQVNVTLSENTTKGSQLARLYAFDTDQGTNAQITYTYSKR
VTRETRNLFHLDEITGVIKLAEKIDSDTGKLYKLVVLANGPACIPDIATVTVKVVKRVSG
PPAVIPRYIASEKDGVVFLSESEPPFTPIAFFTIKNADPRKKVTCLLQGPGPFRLLPYTN
LKNEYLLETTDLLDYEEQKYYELTVLVRNTDGVSVETQVKVQMLDDNDNAPIFKQSVIDI
KIEENNAPETFLYKLQATDEDSGNRGEVLYLLGSDAPPVFHLDRLTGVLTVTTSLDREEK
ETYRFIVRAIDCGTPRKESIATVSITVLDRNDNSPRFINKDFTFFVPENFPGFGEIGVLS
VTDADAGENGWVALSIINGSDIFVIDTGRGALRAKSPLDREQQGTYYIWIEAVDGGKPAL
SSITMVTVLLLDVNDNPPMVLFPQSNQSYLLVLPSTLPGTSITEVYAVDRDTGMNAVIAY
SIIKRRGGEPGSFDIDPDTGNITLRKVLSGRGLYSLLVKVSDHGQPEPLHSTVMVNLFVN
ETVSNETYIQSLLTKEADIGIEEVRPPNRLAQGPEYNGLLPCRLLLIALSTTCLGLLLIV
VSLTAYICCKRQKIHKKKRLEVEIPLKMNSDRQAMDRKLMEISNI
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaacatacgcaaaggttcctgcctgtttagggaaagaaagttctggggtttttgg
attctcctgctgtacacaagtcctctatcctgcttttcgaagttcagccatcttgtctat
aagataaaggaaggcttacccaaggggattctcattgggtctgtttcagaagatttaaag
ttggatttctccgtcgaccctcctcgtttgtttcatctggagttaaggcagagtggctcc
cagtatgttaatctaagcgaaacaaccggggatctatatacttctgctttggagattgac
cgagaaactctatgtgcagattcctatgagggtcaagggtgcactatttctctggatgta
atcattttgccccagcaatacttccagctagttaagatcaaaatcatcattgaagatgtt
aatgacaacaagccacaatttccagtggacgagatcagggtgtctgtgccagaaaatgcc
ccagtcaatgctcggttcgtggtagaacaatctgctgtagacccagatataggtatttat
ggggttcagacctactggctggctaatgactttggagttttcacactggatgttgagcaa
aatgaagggggagagttgactcctttcctaatcattactgggccactggacagggaaacg
aaagcggaatatttaactgacttcatcgctgaggacggaggctctccaccttttttgggc
actgccacacttagaattattatcacagatgtaaatgacaattgcccaaaattcagcgaa
acccaggtgaatgtgacactttctgaaaataccacaaagggttcacagttggcccgactt
tatgcctttgacacagatcagggtaccaatgctcaaattacatacacttacagtaaaaga
gtaacccgggaaactaggaacctatttcatttggatgaaatcacaggagtcatcaagcta
gctgaaaagattgattctgacaccggaaagttgtacaagctggttgtgctggctaatggg
ccagcttgcataccagatattgctactgtcactgtgaaggttgttaaacgtgtttcagga
ccacctgctgtcataccccgttacattgcttcagaaaaggatggtgtggtttttctgagt
gaatcagagccaccctttacacctattgcttttttcaccataaagaatgccgacccaagg
aagaaggtgacatgcttattgcaagggcctggacctttcaggctcttgccatatacaaat
ttgaaaaatgagtacttgctggagactactgatttgttggattatgaagagcagaaatat
tatgaactcactgtgctggtcagaaacacagatggtgtaagtgttgagacacaggtgaaa
gtgcaaatgttggacgataatgacaatgcacccatatttaagcagtcagttatcgacatc
aagattgaggagaacaatgctccggaaacatttctctataaactccaggccactgatgag
gacagcggtaacaggggtgaggtactctatcttcttgggtcagatgctcccccagtcttc
caccttgatcggctgaccggtgtcttgaccgtgaccacctctcttgacagagaggagaaa
gagacctaccggtttatagttcgagcaattgactgtggcacaccgagaaaggagtcaatt
gccaccgtttcaatcactgtgcttgatcgcaacgacaatagtcctcgttttatcaacaaa
gattttaccttctttgttccagaaaacttcccaggatttggagaaattggagtgctgtcc
gtcacagatgcagatgctggggaaaatggctgggtggcactatcaattatcaatggaagt
gacatatttgttattgacacaggacgaggggctttgagagcgaagagcccactcgacagg
gagcagcaaggaacatattatatctggattgaagctgtggatgggggtaagcctgcactc
tcctctatcaccatggttactgttttgctcctggacgtcaatgacaacccaccaatggtg
ttgtttccccagtccaaccagtcctacttgctggttcttccaagtacactcccaggaaca
tccatcacagaggtctatgctgtggacagagacactggcatgaacgctgtcattgcttac
agcatcatcaagcgaaggggtggtgaaccaggctcatttgacatagacccagatacagga
aacatcacactcaggaaagtcttgagtggccggggcctgtacagcctgctggtcaaagtc
agtgatcatggccaacctgaaccattgcactccactgttatggtcaacttgttcgtcaat
gagaccgtaagcaatgagacttacattcagagcctcctaacaaaagaggcagatatcggg
attgaagaggtcagaccaccaaacagacttgcccaggggccagagtataacggactctta
ccctgcaggctgctacttattgcccttagcactacctgtctggggcttctacttatagtt
gtgtcactaactgcatacatatgctgtaagagacaaaaaattcataaaaagaaaagactg
gaagtagaaatccctttaaaaatgaacagtgacagacaagccatggacagaaagctaatg
gaaatttccaacatatga
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