Silurus meridionalis (southern catfish): 124390866
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Entry
124390866 CDS
T08004
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo02010
ABC transporters
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124390866 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124390866 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smeo02000
]
124390866 (abca7)
Transporters [BR:
smeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124390866 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
124390866
NCBI-ProteinID:
XP_046712904
LinkDB
All DBs
Position
9:complement(18342892..18364468)
Genome browser
AA seq
2308 aa
AA seq
DB search
MAIGTQLLLLLWKNFIYRRRNKIQLIIELLWPLFLFLILIAVRHSHPPYKHSQCHFPNKA
LPSAGTLAWVQGIICNINNPCFHYPTPGETPGEVGNFNNSILSRIFVDGRTLLTNLGNHT
VLSALDDLSLAVQRLAERQEAWPNLPVGEYLQANETFSSFLRTNCSLPPSAVDQLLRAKL
NLRVVSLAGAGLRSSDIICNATLLESYLTVKEGNSSFTELQQYLCDVPSDLLQQAEQIFL
SELNLSKIFTRKRLRSNAAEVRLLSRTVSSLTPEFVSLMNDISSLSSFTELNAELRLFFP
ENSSVLPRESFQAFSRIMCGHPEVGGEKIPSFNWYEDQDIKSFLGKDGMYENIVDLDNTT
TPFCQNLIQTLESNPLSRIIWRGIKPLFIGKLLYTPDTPATQSIMKEVNRTFQYFEIVEE
IHAAWEEVGPRLKLFMESSVEIRMLQDLLRRPEVAVAVNLQLKNTSWTASRIAHFLSTPN
SDPPEKQGEPATWLDLYQDFNNTIGFLSQLTKCFSPNKLEGMATEGQLVERALELLEDRQ
FWAGIVFLLPNHSYSELPPHVKYKIRMDIDDVTRTNKIKDKFWDPGPAAEPFSDMRYVWG
GFVYVQDLVERAITLVLSGKQPNTGIYIQQMPYPCFVDDVFLRVLNRSLPLFMTLAWIYS
VAMIIKGVVYEKEARLKETMKIMGLGSGRLWLSWFISSYLPFLFSAGLLIIALKLGDILP
YSDPAVIFLFLAAFATATIMLCFLISTFFSRANLAAACGGLIYFSLYLPYVLCVAWREYL
TSTHRILASFLSPVAFGFGCEYFSQYEEQGVGIQWFNLLSSPTEGDTYNFNTSIIMLYVD
AFIYGVATWYIEAVFPGQYGIPRPWYFIFKLNYWGGVPLEADMHVPPVPDDQQDNQIEQE
PSHLVLGVAIHDLVKIYKKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTMSILTGLFP
PTAGTVYIKGKDIRTDMDIIRRTLGVCPQHNVLFPMLTVEEHVWFYGRLKGMSSAEVKEE
MASLLEDVGLLFKRHEQTRNLSGGMQRKLSVAIAFIGGSKVVVLDEPTAGVDPYSRRGIW
DLLLKYRKDRTIILSTHYMDEADLLGDRIAIISQGKLCCCGSPLFLKARLGTGYYLTIVK
KEIHCLTPSSTSVANLSASTLMKESHSSMSDDTGLGNEICGSDVSGLLALAQHHIAGVRL
VKDVGREAVINFPHAASEDGTLALFLAELEKHQSEFGIVSYGLSDTTLEEIFLKVAEDTG
VDADPEEGVGEKPEDWDTERQLYTTDANETDPLSTNVQRGMTLTGWGLTRQQLRALFTKR
LKYALRSRRGFIAQVVLPAVFVLVALLFSLIVPPFGKYPPLELQPWMYGEQYTFFSNDVP
ENPEIQNLLHALLDPPGFGTKCMESQMENQCDVNEAGTVFLRPQISYKTWQLYNQANWTN
EQTSPGCECSTEDVRRMLPECPAGAGGLPPPQIKRPTGDLLQNLTGHNISDYLIKTYPQI
LKKSMKTKKWVNEFRYGGFSLGTETLPGQTDIIQLEESVVAIRTRYKIPQNSSLDQLLDR
LPGLLTGLSSQNNVKVWFNNKGWHAMVSFVNIMNNGLLRASLPPGPERGKYGITAYNHPL
NLTKEQLTEMALMTTSVDVLVSICVIFAMSFVPASFVLFLIEERVSKSKHLQFVSGVKPI
LYWTANFIWDMLNYTVPATMVVLIFISFQQQSYVSEKNLPALVLLLLLYGWSITPLMYPA
SFVFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDEHLNEVNRILKKVFLIFPHFCLG
RGLIDMAKNQAISDAFKRLGNKQTLEPLAWDFVGKNLFAMAVEGVVFFIFTVLLQYKFFI
RFRLWSDPVLPPLGPEDEDVANERKRVKSNNTREDILTVKDLSKVYKAGKRPAVNQLCLS
IPRGECFGLLGVNGAGKTSTFRMLTGDTTITYGDAFLNNYSVLNDMDSVHQLMGYCPQFD
AINDLLTGREHLEFYARLRGVPEPYVAKVSRWGVKKLGLTQYAEQEAGGYSGGNKRKLST
AISFIGAPPVVFLDEPTTGMDPKAKRFLWNCILSVIREGRAVILTSHSMEECEALCTRMA
IMVNGRFQCLGSVQHLKNRFGDGYTINLRLSASSPEPCPVDAYIQSCFPGIELKERHHNV
LQYQLPTHACSLAHVFDILSNNSEELGIAEYSVSQTTLDQVFVNFAKEQMDDDGQLREVS
INSGSDGSQWHTTQKSSQTIYPSQASSFEPERSRVNAAQSLGLLSSSRSSQPEAAGSKTK
ESKWNETKQPQQLQMQPLVDFPANGLKC
NT seq
6927 nt
NT seq
+upstream
nt +downstream
nt
atggccataggaacccagcttttactccttctgtggaagaacttcatctaccggaggagg
aacaagatccagctgatcatagagctgctctggccactgttcctgttcctcatacttata
gcagtacgtcactcgcaccctccctacaagcacagccagtgtcacttccccaacaaagct
ctcccgtctgccggcactttagcatgggttcagggcatcatctgcaacattaacaaccca
tgctttcactacccaactccaggagagactccgggtgaagtggggaattttaataactcg
atactttctcgaatattcgtggatggcaggacccttctcaccaaccttggcaatcatact
gtcctgtcagccttagacgacctctcgcttgctgttcagagactggcggagaggcaggaa
gcttggccaaatctgccagtaggagagtacctacaagccaatgagacgttctcctctttt
ttgcggaccaactgcagccttcctccttcagctgtagaccagttactgagagcgaaactc
aacctccgggtggtgtcgctggcaggcgccgggttgcgttcgtctgatatcatctgcaac
gccacgcttctggaaagctacctcacagtgaaagaaggaaactcctcattcaccgagctg
cagcagtacttgtgtgatgttccttcggatttgctgcagcaggccgagcagatcttcctt
tcagaattaaacctcagcaagattttcacaaggaagcgactccgctctaatgctgctgaa
gtgcgactgctcagccggaccgtctcctctttgactccggagtttgtctcacttatgaat
gacatatcctctttgtccagctttacggagctgaatgccgaactgaggctgttttttcca
gaaaacagctcagtgctcccacgtgagagcttccaagctttctccaggattatgtgcgga
catcctgaggtgggcggcgagaagattccttcctttaactggtatgaagaccaggacatc
aagtcgttcctaggtaaagacgggatgtacgaaaacatcgtggatttagacaacactacc
actccattttgtcaaaatctgattcaaactctcgagtcgaatcccctttctcgcattata
tggagaggcattaagccactttttattgggaaacttctttacaccccggacactcctgct
acacagagcatcatgaaagaggtgaacaggaccttccagtactttgagatcgtggaggag
attcatgccgcatgggaggaagtgggacccaggctgaagctcttcatggaaagcagtgtg
gagatccgtatgctacaggatttgctgaggcgacccgaggtggctgttgcggtgaatctc
caactaaagaacacttcatggacagcttctcgcatcgcccacttcctctccacgcctaat
tcagaccctcctgagaaacaaggagagcctgcaacatggctggacctgtatcaagatttc
aataacactattggcttcctgtcgcaactcacaaaatgtttttcaccaaataagctggag
ggaatggccactgaagggcagctggtggagcgggcattggagctgctggaggatcggcag
ttctgggctggaatagtcttcctcctcccaaatcattcctactcagagcttcctcctcac
gtcaagtacaagatccgcatggacatagatgatgtcacacgcacaaataagatcaaagac
aagttctgggatcctggtccagctgcagagcccttcagcgatatgcgatatgtatggggc
ggcttcgtctacgtgcaggatttagtggagcgagcaataacacttgttctgagcggcaaa
caaccaaatacaggaatatatatacagcagatgccctacccatgctttgtggatgacgta
tttctgcgcgtactaaatcgttcgcttcctcttttcatgacgctggcgtggatttactca
gtggcaatgatcattaaaggcgtggtgtatgagaaggaggcacgactgaaggagactatg
aagatcatgggcttgggctcaggaaggctttggctcagctggttcatcagcagctacctg
ccctttctgtttagtgctggccttctcattattgcactcaagttgggagatatcttgccc
tacagtgaccctgctgtgatcttcttgtttttggccgcctttgccacagccacaatcatg
ctgtgcttcctcatcagcacgttcttctcccgtgccaatctggctgcagcctgtggaggt
ctcatctacttctctctatacctgccctatgtgctctgtgtggcctggagggaatatctg
acgagcacgcacagaatactcgcaagctttctctctccagtagcctttggatttggctgt
gagtacttttcccagtatgaagagcaaggagtgggtattcagtggtttaatcttctgtcc
agtcctactgaaggagacacatacaacttcaatacttcaatcataatgctgtatgtggat
gccttcatctatggagtggccacttggtacatagaagctgtgttcccagggcagtatgga
attccccggccttggtattttatctttaagctaaattactggggaggagtaccgctggag
gctgacatgcacgttcctccagtaccagacgatcaacaagacaatcaaattgaacaggaa
ccttctcatctcgtccttggagttgccatacatgacttggtgaaaatatataaaaaaggg
gccaagcttgctgttaatcatttgaatctcaagttctatgaggggcaaatcacgtcattc
ctgggtcacaacggagctggcaagacaacaacgatgtccattctgactggactgttccct
ccgactgctggcacggtttacataaagggcaaagacattcgcacggacatggacatcatc
cgtagaactctgggagtgtgtccccaacacaatgttcttttcccaatgcttactgtggaa
gagcatgtatggttctatggccgtcttaaaggcatgagcagtgctgaggttaaagaggag
atggcttccctgctagaggatgtgggactgttgttcaaacggcacgagcagaccaggaac
ctctcaggtggaatgcagaggaagctctcagtagctatagcctttataggcggttctaag
gtagttgtcctggacgagcccactgccggagtggacccctattcacgacgtgggatttgg
gacctactgctcaaataccggaaagatcgtaccattattctgtctacacattacatggat
gaggccgatctcctgggcgatcgcatcgccatcatctctcaggggaagttgtgttgctgt
ggctcaccacttttcctaaaagctcgtttgggtacaggatattacctcaccatagtgaag
aaagagatccattgtctcacaccaagcagtacaagtgtcgccaatctctcagcatcaacg
ttgatgaaggagagtcattcctccatgagtgatgacactggacttggaaatgagatctgt
ggatcagatgtgagtggccttttggctcttgcccaacatcacattgctggggttcgacta
gtaaaagatgtgggcagagaggcagtaatcaactttcctcatgctgcctcggaggatggc
actctcgcccttttcttggctgagctggagaaacatcagagcgagtttggcattgtcagt
tatggactctcagataccacgctagaggagatctttctgaaggtggccgaagatacaggt
gtagacgctgacccagaagaaggagtgggagaaaagcctgaggactgggacacagaaaga
caactgtatacgacagatgcgaatgaaacggacccactgagtactaatgttcagcgtggg
atgaccctcacaggctggggtctgacccggcagcagctccgcgcactctttaccaagaga
ttaaagtatgccctccgcagccgccgaggtttcatagcacaggttgtgctgcctgctgtg
tttgtgctggtggctctgctgttcagccttattgtcccaccctttggaaagtatccccct
ctcgagctgcagccatggatgtacggcgaacagtacactttcttcagcaacgatgtccca
gagaaccctgaaatccaaaatctcctccatgctcttctggatccgcctggatttgggacc
aagtgcatggagtcacagatggagaaccagtgtgatgtcaatgaggcagggacggtgttt
ttgcgaccccagatttcctacaaaacatggcagctttataaccaagccaactggacaaat
gagcagacttctcctgggtgcgaatgcagcacagaggatgttcgcagaatgctacctgaa
tgcccagcaggagcaggaggattgcctcctcctcagataaaaaggccgacaggtgatcta
ctgcagaatctgaccggccataatatttctgactacctcatcaagacttatccacagatt
ctaaaaaaaagcatgaagactaaaaagtgggtgaatgagtttaggtatggaggattctct
ctgggaactgaaaccttacccggtcagacagacatcattcagctagaagagtctgtagtg
gctatcagaacacgctacaaaataccacagaacagctcacttgatcaacttttggacagg
ttaccaggccttcttactgggcttagtagtcaaaacaatgttaaggtgtggtttaataat
aaaggttggcatgccatggtgtcatttgtgaacatcatgaacaacggactgctccgtgcc
agtcttcctccaggaccagaaagagggaagtatggaataacagcctataatcatccactt
aacctcactaaggagcagctcacagagatggccttaatgaccacctctgtggacgtcctg
gtgtccatatgtgtgatttttgccatgtcctttgtcccagcaagttttgtattgtttctg
atcgaggagagagtcagcaagtctaagcaccttcagtttgttagtggggtgaaacccatt
ctgtattggactgcgaactttatatgggacatgttgaactacacggttcccgctaccatg
gtggtcctcatctttataagcttccaacagcagtcttatgtctctgaaaaaaaccttcct
gcgctagtgctgcttctcttgctctacggttggtccataactccactgatgtaccctgcc
tcgtttgtgttctctgtgcccagcacagcctatgtggtgctcacctccatcaaccttttc
atcggcatcaacggcagcatcgccaccttcgtcctcgagctctttgttgatgaacattta
aatgaggtcaataggatcctgaagaaggtctttctgatctttccgcacttctgtcttggg
cgaggtcttattgacatggctaaaaaccaggcaatttcagatgctttcaagaggcttgga
aacaaacagacactggagccactggcatgggattttgtagggaagaacttatttgccatg
gcagtcgagggtgttgtctttttcattttcactgtactacttcagtataagttcttcata
cgctttaggttgtggtctgatcctgtcctgcccccattgggcccagaggatgaggatgtg
gcaaacgaaaggaaacgtgtgaaaagcaacaacactcgggaggatattctcactgtcaaa
gacctgagcaaggtctataaggcaggcaagaggccagcagtgaaccagctttgtcttagc
attcctcggggagagtgcttcgggcttctcggggttaatggggctggaaagacttccaca
tttcgcatgctaacaggagataccaccattacctatggagatgcttttctcaataattac
agcgtgctgaatgacatggacagcgtgcaccagcttatgggttactgtcctcagtttgat
gccatcaatgaccttttgactggaagagagcacctagagttctacgctcgactgagaggc
gtccctgagccatatgtagcaaaggtctcacggtggggagtgaaaaaactgggattgaca
cagtatgctgagcaagaagcaggaggatacagcggaggcaataaacgcaaactctcaacc
gccatttcttttatcggcgcgccgccagtcgtttttctggatgagcccacaacaggaatg
gatccaaaggctaagcgcttcttgtggaactgtatccttagcgtcatcagagaaggtcga
gctgtcattctcacatcccacagcatggaggaatgtgaagctctctgcactcgcatggcc
atcatggtcaatgggaggttccagtgtctgggttcagtgcagcacctcaagaacagattt
ggagacggttatacaattaatctccgcttgtccgcatcatctccggaaccctgccccgtg
gatgcctacatccagagctgctttcctggaattgagctaaaggagagacaccacaacgtt
ctgcagtatcagctcccaactcacgcctgctctctcgctcatgtctttgacattctgtca
aacaacagcgaggagttgggaatagcggaatattccgtctctcagacaacactagaccag
gtgtttgtcaactttgccaaggagcagatggatgacgatggccaactaagagaggtgtcc
ataaacagtggatcagatggatctcaatggcacacaactcagaaatccagccaaactata
tatccatcacaagcatcttcttttgagcctgagagatctcgagttaatgctgctcagtca
ctaggtctgttatcatcatccagatccagtcagccagaagctgctgggtcaaagaccaag
gagagcaagtggaatgaaacaaagcaacctcagcaactgcaaatgcagcctctggtggat
tttccagctaatggattaaagtgctga
DBGET
integrated database retrieval system
