Silurus meridionalis (southern catfish): 124390938
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Entry
124390938 CDS
T08004
Name
(RefSeq) cartilage oligomeric matrix protein
KO
K04659
thrombospondin 2/3/4/5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04145
Phagosome
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124390938
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124390938
09144 Cellular community - eukaryotes
04510 Focal adhesion
124390938
09142 Cell motility
04820 Cytoskeleton in muscle cells
124390938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124390938
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124390938
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124390938
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Phagocytosis
Opsonins
124390938
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124390938
Exosomal proteins of colorectal cancer cells
124390938
Exosomal proteins of bladder cancer cells
124390938
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124390938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
124390938
NCBI-ProteinID:
XP_046713011
LinkDB
All DBs
Position
9:18427473..18438417
Genome browser
AA seq
756 aa
AA seq
DB search
MLISVFLILLLSGFFDIGRSVAPSQVAAKDDEIINQIKGTNQALAEIKELLKQQIEEIVF
LKNTVMECEACAMRTEDPVEKPSCDPNPCYRGVTCTETVNGIRCGPCPQGMEGNGTHCED
IDECSVKPCHMGVRCINTSPGFRCGQCPAGYEGPQVQGFGLDYAIANKQVCRDINECEIS
NGGCVENSICLNTAGSFRCSHCKPGFIGDQTQGCKPERACGNGQPNPCHASAECITHRDG
SIECVCGVGMAGNGYMCGTDTDIDGFPDEKLLCSDRNCAKDNCLTIPNSGQEDADKDGIG
DTCDEDADGDGILNTEDNCVLVPNVNQKNTDQDDYGDACDNCRLMKNNDQRDTDNDGDGD
ECDDDVDGDGIKNDKDNCVKVPNADQIDRDGDNVGDACDSCPYIRNPDQMDADNDLIGDP
CDTNKDSDGDGHQDSRDNCPAVINSSQLDTDKDGKGDECDDDDDNDGIPDLLPPGPDNCR
LIPNPLQEDWDGDGIGNVCEKDFDNDTIIDQIDVCPENTEVTLTDFRAYQTVVLDPEGDA
QIDPNWVVLNQGREIIQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQD
SSSFYVVMWKQVEQIYWQANPFRAVAEPGIQLKAVKSETGPGENLRNSLWHTGDTSNQVK
LLWKDPRNVGWKDKTSYRWFLQHRPHDGYIRVRFYEGPKMVADTGIIIDTTMRGGRLGVF
CFSQENIIWANLRYRCNDTIPEDFDTYKSQQTHLHI
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgttaatatctgtatttcttattctgttactctcaggattttttgatataggaaggagt
gtagcacccagccaagtggcagcaaaagatgacgagataataaatcagattaagggcaca
aaccaggccctggctgaaattaaggaacttctaaaacaacagattgaggagattgtgttt
ctaaaaaacactgttatggagtgtgaagcctgcgccatgcgcacagaagatccagttgaa
aaaccatcctgtgatcccaatccctgctaccgaggagtgacttgtaccgagacagtgaat
ggtatcagatgcgggccatgtcctcaaggcatggagggcaacggcacacactgcgaagac
atcgacgagtgctcggtgaaaccatgccatatgggtgtacgatgcatcaacacatctcct
ggtttccggtgtggtcaatgtcctgctggttatgaaggtccccaggtgcagggtttcgga
cttgactatgccatagccaacaaacaggtttgccgagacataaatgagtgtgaaatctca
aatggcggctgtgtggagaattccatctgtttaaacacagcggggtctttccggtgcagc
cactgcaagccaggcttcataggagaccagacacagggctgtaagcctgagagggcatgt
gggaatgggcaacccaacccttgtcatgcgagtgctgagtgtatcacccatcgggatggc
agtattgagtgtgtttgtggagttggtatggctggcaatggatacatgtgcggaactgat
acagatattgatggcttccctgatgaaaaactactttgctctgacagaaactgtgctaag
gataactgtctcacaatacccaactctggccaagaagatgctgataaggatggcattgga
gatacttgcgatgaagacgcagatggggatggaatcctgaatactgaggacaactgtgtg
cttgtgccaaatgtaaaccagaagaacactgaccaagatgattatggagatgcttgtgat
aactgtcgcttaatgaaaaacaacgaccaaagggacactgacaatgatggcgacggtgac
gaatgcgatgatgacgttgacggtgatggcataaaaaatgacaaggacaattgcgtgaag
gttccaaacgctgaccagatcgatcgagacggagataatgttggtgacgcatgtgacagt
tgtccttacattcgcaatcctgaccagatggatgctgataatgatttgattggtgatcct
tgtgacaccaacaaagacagtgatggagatggtcatcaggactcacgcgacaactgtccc
gcggtcataaacagttctcagttggacacagacaaagacggcaaaggggacgagtgtgat
gacgacgacgacaatgatggcattcctgacctccttcctccgggaccagataactgcaga
ctcattcccaaccctctacaggaagattgggatggagacggaattggaaacgtctgtgaa
aaggactttgacaatgacacaatcatagaccaaattgatgtgtgccctgaaaacacagag
gtcacccttacagacttcagggcctaccagactgtggttctggacccagaaggagatgca
caaattgacccaaactgggtggtgcttaatcagggacgagagatcattcaaaccatgaac
agtgaccctggactagctgttggttacactgcattcaatggtgtggactttgaagggaca
tttcatgtaaatacggtaacggatgacgattatgctgggtttatctttggctatcaggac
agctccagtttttacgtagtcatgtggaagcaggtggagcagatctactggcaagcgaat
ccttttcgagctgtggctgaaccaggaatccaactcaaggccgtgaaatcggagacaggg
ccaggagagaatctgcgaaactcgctgtggcacacaggtgatacctccaaccaggtgaag
ctgctgtggaaagatccgagaaacgtgggctggaaggacaaaacttcttatcgttggttc
ctgcagcacagaccccatgacgggtacatcagggttaggttctatgaaggccccaagatg
gttgcagacacaggaatcattattgacacgaccatgagaggaggcagacttggagtgttc
tgcttctcacaggagaacatcatctgggccaacctgcgctaccgatgcaatgataccatc
ccggaggacttcgacacgtacaagtcccaacaaacccatcttcatatttaa
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