Silurus meridionalis (southern catfish): 124390959
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Entry
124390959 CDS
T08004
Symbol
si:ch73-63e15.2
Name
(RefSeq) LOW QUALITY PROTEIN: protein strawberry notch homolog 2
KO
K26273
protein strawberry notch
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124390959 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124390959 (si:ch73-63e15.2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
124390959
NCBI-ProteinID:
XP_046713058
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Position
9:complement(263255..339025)
Genome browser
AA seq
1425 aa
AA seq
DB search
MPFFFTSSAMEGQNCSPTEETHMNAGMLGLASTAMENPLCTPWSFTADAPFNLRWSAEST
SQEQGSSSTSDMHMDIFSQSALSDLDMLTLQYGHDLLQDLVCIDDLTDISPISTDPLSDF
VDVIPVPTIWDINTPTPTQEQYSNRFQDIQSLADITALISTPPPVQRSQPEEEEEIEEEE
TEELGHVNTYADYKPSKSSIGNSHPDRVVETNTLSSVPPPDITYTLSIPEAIIQCGVLSA
LQLEAIIYACQQHEVILQNKQRAGFLIGDGAGVGKGRTVAGIILENFLKGRRKALWFSVS
NDLKYDAERDLQDIRAPSNILVHALNKIKYGDTATSEGVLFATYSALIGESQAGGQHRTR
LKQILDWCGPEFDGVIVFDECHKAKNATSTKMGKAVIQLQNKLPLARVVYASATGASEPK
NMIYMSRLGIWGEGTQFKTFEDFLHAIEKRGVGAMEIVAMDMKVSGMYIARQLSFSGVSF
RIEEISLDNDFTLVYNKAAKLWAEALAVFTQAADLLGMVSRKSLWGQFWSSHQRFFKYLC
IASKVRCLVELAKKELEAGKCVVIGLQSTGEARTREVLDENEGHLDKFVSAAEGVFQSLV
QKHFPLEKQRKEKGAASKRKRKAKVRQSKCPRQGADGRSVVNVSDDSSTESDGVDSDSNS
SPDSLQDNGDDVIFITQTNCYAARLEEMKQSLLIKISELGKELPLNTLDELIDKFGGPEK
VSEMTGRXGRVVRQMDGSVHYESRAEHGHTIDHINIKEKDRFMNGEKLVAIISEAASSGI
SLQADRRXKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYIFLISELAGERRFA
SIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGNRALEKITRAILGHIDSKVAPPKD
YPGGDAMFFRDMKQGMLDVGIFCKEARLGINPEKDCTITKFLNRILGLEVHKQNSLFQYF
SDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYNETQERFLTPGNPQEGQVILYKISVDRG
MPWEEALNKSHTLSNPDEGFYISHKLRGNHPCVLLAELGRGHNLTIYKPNVGKQKQAESL
ESIQKKYRKVTPEEAKESWENQFTFSLRKCSHANWNGRCRKVEEGQECLQGMRLRQYHVL
CGALLCVWKRVADVVADVTSSTILQIVRLKTREYKQVGIKIPENCVTQVRDELDHMDKEX
KRRRQEKELQAQEQQQAKQHQRMLEERRREICMFYSPLSQLSSPPNLSNHYPGPLFSLKK
STEGILDLTVPGSSRVSPHGTGKVSDYSLDSLIQLEQNHAPLRDSAHKEFLDILNLLPET
SECQPALPTSSLDSLHAAPTNLFSTSTIYTSTPSSLFSTSLTPSSSNSSLSLFSSLSPSD
QRPFANYSDDNAIDAKEVLNSMLRSGLDCRQSVIQVRAPESEHLS
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgccatttttcttcacttcctctgccatggaaggacagaactgttctcctacagaggaa
acacacatgaatgctggaatgttgggcttggcttctactgctatggagaatccgctctgc
acaccctggagtttcaccgctgatgcgcctttcaacctgcgctggtctgcagagtccacc
agtcaagaacagggttccagcagcacctcggacatgcacatggacattttcagccaatct
gctctgtctgatctggacatgttgactctgcagtatggtcatgacctccttcaggacctg
gtatgtattgatgatctgactgatatctcccccatttctacggaccctctgtctgacttt
gtagatgtcattcctgtacctaccatatgggacatcaatacaccaacaccgactcaggag
cagtattccaaccggtttcaggatatacaaagtttagctgatatcacagcacttatcagc
acaccgccacctgttcagcgttctcagccagaagaggaggaagagatagaggaagaagag
acagaagagctcggccatgtaaacacctatgctgattacaaaccttctaaatcctctata
ggaaactcacaccctgaccgtgtagtggagaccaacacactttcaagcgttcctccacca
gacatcacctacacactctctatccctgaggccatcatccagtgtggggtgctctctgcc
ctgcagctcgaggccatcatctacgcctgccaacaacatgaggtgatcctccagaacaag
cagagagcaggttttctgattggagatggagctggagtggggaagggccgcacagtggct
gggatcattctggagaacttcctaaagggaaggagaaaagcattatggttcagcgtatcc
aatgacctcaaatatgacgctgaacgagatcttcaggacattcgtgctcctagtaatatt
ctagtacatgctttgaataagataaagtatggagacacagctacctctgaaggggttctg
tttgcaacctactctgctctgattggagaaagccaggcaggaggtcagcaccgcaccaga
ctcaagcagatcctggattggtgtggaccagaatttgatggagtcatcgtgtttgatgaa
tgccataaagctaaaaatgccacatccaccaaaatgggcaaagctgtgattcagctccag
aacaagcttcctctggccagggtggtgtacgccagtgctacaggtgcttctgagccaaag
aacatgatctacatgagtcgtctgggaatctggggagaaggaacacagtttaagacgttt
gaagatttcctccacgcgatagagaaaagaggtgtgggtgccatggagattgtcgctatg
gacatgaaggttagtgggatgtacatcgcacggcagctgagcttctctggggtttcgttc
cgcatcgaagagatcagcttggacaatgacttcacactcgtttacaacaaagctgccaaa
ctgtgggcagaagctttggccgtgttcactcaggcagcggatttactcggtatggtgtcc
aggaagtctctatggggtcagttctggtcttcccatcagcgcttttttaaatacctgtgt
atcgcctcgaaggtgcgctgtctggtcgagctggcgaagaaagaactggaagctggcaag
tgtgttgtgatcgggctgcagtccacaggtgaagcacgaactcgagaagttcttgatgaa
aatgaaggacacttggacaagtttgtttctgctgcagaaggtgtgttccagtctctggtc
caaaagcactttcctttagagaaacagagaaaagaaaaaggagccgccagcaagaggaaa
cgtaaagctaaagttcggcagtcaaagtgccccaggcagggggcagatggcaggagtgtc
gttaacgtcagtgatgacagcagtacggagtctgatggagtggacagtgactccaactcg
tctcctgattcactacaggacaacggcgatgacgtcatcttcattacacaaaccaactgt
tatgctgctcgtttggaggagatgaagcaaagcctcctgattaaaatctcggagctcggg
aaagaactacctctgaacacactggacgagctcattgataaatttggaggtccagagaag
gtttcagagatgactggacggnaaggtcgagtggttcggcagatggatggaagcgttcat
tacgagtctcgagctgaacacggccacaccattgaccacatcaacatcaaggagaaggat
cgcttcatgaacggagagaagctggtggcgatcatctctgaagctgccagttcagggatc
tctttgcaggcagaccgacggntgaagaaccagcgtaggcgagtccacatgaccctggag
ttgccctggagcgctgacagagccattcagcagtttggtcgcactcaccgctccaaccaa
gtcactgccccagagtacatcttcctcatctctgaactcgccggggaaagacgcttcgcc
tccattgttgctaagaggctggagagcctgggagctctgacacatggagatcgaagagcc
acagagtctagagacttaagcaagtacaactttgagaataaatatggaaacagggctttg
gagaagatcaccagagccattctgggtcacatcgacagtaaagttgctcctcctaaagac
tatccaggaggtgatgccatgttcttcagagacatgaagcagggcatgttggacgttggt
attttctgtaaggaggctcgccttgggatcaaccctgagaaagactgcacaattacgaag
ttcctgaatcggattttgggtttggaagtgcacaagcagaactcactctttcagtacttc
agtgataattttgactacctaattgaaaaggacaaaaaagaagggaaatatgatatgggg
atcctggatctggctcctgggaatgacgagatctacaatgagactcaggagaggtttctg
actccaggcaacccgcaagaaggccaagtcattctctacaagatcagtgtggacagaggc
atgccctgggaagaagctcttaataagtctcacactctcagcaacccagacgaaggtttc
tacatctcccacaagttgagagggaatcacccctgtgtgctgctggccgagttgggccga
ggtcacaacctgaccatctacaagcccaatgtgggcaaacagaagcaagcggagagtctg
gagagcatccaaaagaagtaccgcaaggtaactccagaggaggcgaaggaaagctgggag
aatcagttcactttctcattaaggaaatgtagccatgctaactggaacgggaggtgtaga
aaggtcgaggagggtcaggagtgtttgcaggggatgcgtttgcggcagtaccacgtgctc
tgcggtgctcttctctgcgtgtggaagcgtgttgctgacgtggtggccgacgtcaccagc
tccaccatcctgcaaatcgtccgcctcaaaaccagagagtacaaacaagttggtataaag
attccagagaactgtgtgactcaggtgcgggatgagctagaccacatggacaaggagngt
aaaaggaggcgtcaggagaaagagctgcaggctcaggagcagcagcaggccaaacagcat
cagaggatgttggaagagcgtcgcagggaaatctgtatgttctacagtccgttatcacag
ctctccagcccacccaacctgtccaaccattacccgggccccttattctcccttaagaaa
tccacagagggcatcttggacctgacagtacctggttcctctcgtgtttccccacatggt
acaggaaaggtatctgattacagtctggactctttaatacagttggaacagaatcatgct
cctctgagggactcagcacataaggaattccttgacattctcaacttgctgccagaaaca
tcagagtgccaacctgcacttcccacatcttcactggactctttacatgctgccccaaca
aacctcttctccacctccaccatctacacctccaccccttcatctcttttctccacctct
ctcacaccatcatcttctaattcttcactttccctcttctcttcactgtctccatctgac
cagcgtccgttcgctaactacagtgacgacaacgccatcgacgccaaagaggtgctgaac
agcatgctgaggagcggcttggactgccgccagtccgtcatacaggtgcgagcgcccgag
tccgagcacctgtcctga
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