Silurus meridionalis (southern catfish): 124391024
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Entry
124391024 CDS
T08004
Symbol
tubb1
Name
(RefSeq) tubulin beta-1 chain
KO
K07375
tubulin beta
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04145
Phagosome
smeo04540
Gap junction
smeo04814
Motor proteins
smeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124391024 (tubb1)
09144 Cellular community - eukaryotes
04540 Gap junction
124391024 (tubb1)
09142 Cell motility
04814 Motor proteins
124391024 (tubb1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124391024 (tubb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124391024 (tubb1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124391024 (tubb1)
04147 Exosome [BR:
smeo04147
]
124391024 (tubb1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Other tubulins
124391024 (tubb1)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulins
124391024 (tubb1)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124391024 (tubb1)
Exosomal proteins of colorectal cancer cells
124391024 (tubb1)
Exosomal proteins of bladder cancer cells
124391024 (tubb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tubulin
Tubulin_C
Misat_Tub_SegII
Tubulin_2
Tubulin_3
Motif
Other DBs
NCBI-GeneID:
124391024
NCBI-ProteinID:
XP_046713247
LinkDB
All DBs
Position
1:8571431..8576690
Genome browser
AA seq
478 aa
AA seq
DB search
MFYLLHRSVSLVTMREIVHLQIGQCGNQISSKFWEVISDEHGINPVGIYEGDTNLQLERI
NVYFTEASGGKYVPRALLVDLEPGTIDSVRGSRIGELFRPDNFIHGNSGAGNNWAKGHYT
EGAELVEQVIDRVRNEAEICDCLQGFQFVHSLGGGTGSGMGTLLINKIREEFPDRIMNSF
SVMPSPKVSDTVVEPYNATLSIHQLIENTDETFCIDNEALYDICFRTLKLTTPTYGDLNH
LVSMTMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLIPRGCQQYQALTVP
ELTQQMFDSRNMMTACDPRHGRYLTVAGVFRGRMSTKEVDEQMLIVQQKNSNYFVEWIPH
NVKVAVCDIPPRGLKMASTFIGNNTAIQEIFRRVGEQFAMMFRRKAFLHWYTGEGMDEME
FTEAESNMNDLVSEYQQYQDATAELDWEPEEEITEVEGNPATVINTRDETNTETVSEA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgttttatcttctgcataggagtgtgagtctggtcaccatgcgtgaaattgttcacctc
cagatcggacagtgtggtaatcagatcagttcaaagttctgggaagttatcagtgatgaa
catggtatcaatccagtgggaatctatgagggggacacaaacctacagctggagagaatc
aatgtctactttactgaagcaagtggtgggaagtatgtccctcgtgcactactggtagat
ttggagccaggaacaatagacagtgtgaggggaagtcgcattggagaacttttcagacct
gacaacttcatacatggaaattctggagctggaaataattgggcaaaaggtcactacaca
gagggtgcagagttggttgaacaagttatagaccgtgtccgtaatgaagctgaaatctgc
gactgcctgcagggcttccagtttgttcactctttgggtggtggcactggctcaggcatg
ggcacattgctcatcaacaaaattcgtgaagagttcccagaccgaatcatgaatagcttt
agtgtcatgccctctcctaaagtctcagacacagtagtggaaccatataatgccacactg
tccattcaccagctgattgaaaatacagatgagacattctgcattgacaacgaagctctt
tacgatatctgtttccgtacacttaagctcaccacgccaacctatggagatctcaatcac
cttgtgtctatgactatgagtggagtcacaacatccctgcgcttccctggtcagttgaat
gctgacctccgcaagctggctgtcaacatggtgccttttccccgtcttcacttctttatg
cctggttttgctcctctcataccacgaggatgtcaacagtaccaggccctcactgttcct
gaactcacccagcagatgtttgattcccggaacatgatgacggcatgtgaccctcggcat
ggccgataccttactgttgcaggagttttccgtggtcgcatgtctactaaagaagtggac
gaacaaatgcttattgttcagcagaagaacagcaattactttgtggaatggatcccccac
aacgttaaagtggctgtttgtgacatcccaccacgtggtcttaaaatggcatctaccttc
attggaaacaacacggccatccaagagattttcagacgtgtcggagagcagtttgctatg
atgttccgccgcaaggcttttctgcactggtacaccggagagggcatggatgagatggag
ttcacagaagctgagagcaacatgaatgatctagtgtctgagtatcagcaatatcaggat
gccacagcagagttggactgggagccagaagaagaaattacagaggtagagggaaatcca
gcaacagtaataaacaccagagatgaaacaaacactgagactgtaagtgaagcttag
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