Silurus meridionalis (southern catfish): 124391049
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Entry
124391049 CDS
T08004
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124391049 (sox6)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124391049 (sox6)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAR2
Motif
Other DBs
NCBI-GeneID:
124391049
NCBI-ProteinID:
XP_046713304
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All DBs
Position
9:16685905..16853715
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AA seq
784 aa
AA seq
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MPSSAEVVSVGEERGPVVKEDRLRIMSSKQATSPFASGADVNEDGPGQERLVWEKDEGME
PLAAPQLPIHNLLHGKIHSEELPPVSSSVPPESDWDSLVSAQQRMESDSNKVCSLYSFRN
NSTSPHKPEEGARERGDLLGASAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDETSCM
EKLLSKEWKEKMDRLNTSELLGEIQGTPESLAEKERQLSTMITQLISLREQLLAAHDEQK
KLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFP
HDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNPLQLQQLYAAQL
ASMQLSPGAKMAPLPQLSNSAGPLSPGPKSEKRSSSPLGQVKEEGTQPLNLSARPKTAEP
VKSPMSPTHSLFPGSKGSPSSQPKSGGIPSPLSLGRGSSLDILSNLNSTALFGDQDAVMK
AIQEARKMREQIQREQLQHHQQSMDAKLSALSGLGLNNCRADKERVHFESLGHHLGKLGE
DGKIGQRVIDLTRPEDLDGGASTTEARVFRESRGRNPNEPHIKRPMNAFMVWAKDERRKI
LQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCI
IDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQTQLPISSSAGVVYPGAISMTSDCSSNS
ASPEPTVPVIQSTFGMKLEPNVPSVVPNEPVNGEDDMDMYEDFEDEPKSDYSSENEVQEP
VSAN
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagtgctgaagtggtgagcgtcggagaggagagagggccagtggttaaggag
gacagactcagaatcatgtcttccaaacaagccacctctccgttcgcctcgggtgcagat
gtcaatgaggacggaccgggacaggagcgcctggtttgggagaaggatgaaggcatggag
cctctggcagcaccgcagctgcccatacacaacctgctgcacggcaagatccacagcgaa
gaactgcctcctgtcagcagcagcgtgccgcctgaatccgactgggacagcctggtgtcg
gcccagcagcgcatggagtcagacagcaataaagtatgttccctgtactccttccggaat
aactctacctctccgcacaagccggaggagggggcacgggagcgaggtgacctgctgggt
gcgtccgccttcggaacgccggaacgccgcaaagggagcctggccgacgtagtggacaca
ttgaagcagaagaagctggaggagatgacaaagacagagcaagatgaaacgtcctgcatg
gaaaaactgctttctaaagaatggaaagagaaaatggatagactgaacacgagtgagctc
ttgggagagatacaaggtactccagaaagtctggctgagaaagagaggcagctttcgacg
atgatcacgcagctgatcagcttgagagagcagttactggctgcccacgatgaacagaag
aaactggctgcctcgcagatggagaagcagcggcagcaaatggagctggctcgacagcag
caagaacaaattgccagacagcagcagcaacttcttcagcagcagcacaaaatcaatctc
ctacagcagcagattcaggtccagggtcacatgcctcctctcatgatccccatttttcca
cacgaccagcgcactctggctgccgccgccgccgcccagcagggcttcctcttcccccca
ggcatgtcctacaagccaggtgataactacccggtgcagttcattccttccacaatggca
gctgccgccgcgtcaggactcaatcctcttcagctccagcaactttacgccgcccagctg
gccagcatgcagctctctccaggagccaagatggcgcctttgccccagctgtctaattct
gcagggccactctcacctgggcccaagagtgagaagaggtcctccagcccactgggccaa
gtcaaggaggagggaacgcagcccttgaacctctcggcccggcctaagacagctgagcca
gtgaaatcccccatgtccccgacacacagcctgttcccaggcagcaagggaagtccaagc
agccagcccaaaagtggaggcatccccagtcccctcagtttgggccgaggatcatccctc
gatatcttgtcaaacctgaactccacagcactatttggagaccaggatgctgtgatgaag
gctatccaggaagcaaggaaaatgagggagcagatccaacgtgagcagctgcagcatcac
caacagagcatggacgctaaactctcggctctttcaggcctcggtcttaacaactgcaga
gctgacaaggaacgagtccactttgaaagtttgggacatcatttgggaaaactgggagag
gatgggaagattggacagagggtaattgacctgaccaggccggaggatcttgatggaggc
gccagcaccactgaggcccgggtgttcagagaatcgcggggacggaaccccaatgagccg
cacatcaagcgacccatgaatgccttcatggtgtgggccaaggatgagcggcgcaaaatt
ctgcaggctttcccagatatgcacaactccaatatcagcaaaattctaggctctcgctgg
aaggccatgtccaaccaggaaaagcagccgtactacgaagaacaggctcgtctgagcaaa
atccacctagagaagtaccccaactacaagtacaagcctcggcccaagcgcacgtgcatc
attgatggcaagaagctgcgcattggcgagtacaagcagatgatgcgctcgcggaggcag
gaaatgcggcagttcttcacggtagggcagcaaccccagactcagctcccgatcagcagt
agtgcaggtgtcgtctatcccggagccatcagcatgacctcggactgctcaagcaactct
gccagccctgagcccactgtgcctgtcatccagagcacctttggcatgaagctggagccc
aacgtgcccagcgtggtccccaatgagccggtcaacggtgaggacgacatggacatgtat
gaggacttcgaggatgaacccaaatcggactacagcagcgagaacgaagtgcaggagcct
gtcagtgccaattga
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