Silurus meridionalis (southern catfish): 124391078
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Entry
124391078 CDS
T08004
Symbol
fxr1
Name
(RefSeq) LOW QUALITY PROTEIN: fragile X mental retardation syndrome-related protein 1
KO
K15516
fragile X mental retardation protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124391078 (fxr1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124391078 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
124391078 (fxr1)
mRNA cycle factors
Stress granule specific factors
124391078 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
Tudor_FRX1
KH_9
KH_1
Agenet
FXR_C1
FXR_C3
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
124391078
NCBI-ProteinID:
XP_046713367
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Position
9:6493684..6507886
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AA seq
698 aa
AA seq
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MDELTVEVRGSNGAYYKGFVKDVHEDSLSISFENNWQPERQVPFCDVRLPPPADVKKEIG
EGDEVEILSRANEQEPCGWWLAKVRMMKGDFYVIEYAACDATYNEIVTFERLRPVNLNKA
VTGNTFYKCTVPVPDDLKAACESELAHKDFKKAVGASRIVFNPEGCDLLVLSVNEVTVKR
VSLLSDMHLRSIRTKLMLMYRNEEATKHLECTKQLASAFQEEFTVREDLVGLAIGSHGTN
IQQARKIPGVTAIELDEESGTFRIYGETTEAVQKARSYLEFLEESVQIPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNDNNLPGKRXALVLKEVSFXSLXYKEXCXWPFCGILLLL
KLQGMVPFTFVGTKESIGNVQVLLEYHIAYLNEVEQLRLERLHIDEQLRQIGSGFRPISA
RSTEKDKEKSYGTEEGVSTVTLHSGRSYTGRGRARRAANHNSAYGTNSEHSYTSETDSER
RDELSDFSLKEVEDERGVQARNNRRRGAGVRGRGGSGVQGRGAGRGSGSTMSSVLKDPDR
NPYSILDTSESDQIADAEASECEPSSRSRRSRRRRPESDDNTSLSENGLDEPKSKPPRQN
RSRRRRIRPPEEKQPVTVADFISRAESHSRQRTPRELKKNKKDLGQVEVISEHSDSKQLT
NGPSADADEPKKTPRASTETSPDGKPDVAKPNAVNGLC
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactgacggtggaggttcgtggctccaatggagcttattataaggggttcgtc
aaagacgttcatgaggattcgctctccatctcgttcgagaacaattggcagccggagaga
caggtcccgttctgtgacgtgcgcttgcctcctccagctgacgtgaagaaagagattggc
gaaggagacgaggtggagatcctctcgagggcaaacgagcaggaaccatgtggctggtgg
ctcgccaaagtacgcatgatgaagggagatttctacgtgatcgagtacgcagcctgcgac
gccacgtacaacgagattgtcacgttcgagcgtctacggccggtgaacctcaacaaagct
gtgacgggaaacaccttttacaagtgcaccgttcctgttcctgatgacctgaaagccgct
tgtgagagtgagcttgctcataaggactttaagaaggctgtaggagcaagcaggatcgtc
tttaaccctgaagggtgtgatctgcttgtcctgtctgtaaacgaggtgacagtgaagaga
gtgtctctcttgagtgacatgcacttgaggagtatccggactaaactcatgttaatgtac
aggaacgaggaggccacaaagcacttagagtgcacgaagcagttggcatcagcgttccag
gaggagttcacggtgagggaagacctggtgggtctcgccatcggcagccacggcacaaac
atccagcaggccaggaaaattccaggagtgacggccatagagctggacgaagagagcggc
acgttcaggatttacggagagacgaccgaggctgtccagaaagcaaggagctacctggag
ttcctggaggagtctgtacaaattcccagaaatctagttggcaaagtgatcggtaaaaac
ggtaaggtcattcaggagatcgtggataaatccggggtggtgcgagtacggattgaagga
gacaacgacaacaaccttccaggcaagaggtgagctctcgttctcaaggaagtttctttc
tgatctctttaatataaagagtagtgttaatggcccttctgtggtattttattattattg
aaattgcagggaatggtgcccttcacgtttgtcggtacaaaggagagcatcggaaacgtt
caagttctcctggagtaccacatcgcttacctgaacgaggttgaacagttgaggttggag
cggctgcatatcgacgaacagctgcgtcagatcggttcgggtttccgccccatttctgca
cgttccaccgagaaagacaaagagaagagctacgggacggaggaaggcgtctccactgtc
acactgcactctgggcgctcctacacgggccgggggcgcgcacgcagggccgccaaccac
aactcagcttacggaacgaactctgagcactcgtacacctcggagaccgattctgagcgg
agagatgagctgagtgacttctctctaaaagaagtcgaggacgagcgtggtgtccaggcc
aggaacaacaggagaagaggggcaggagtcagaggtcgtggtggctcaggagtccaaggt
cgtggggctggaagaggctcagggagcaccatgagctcagttctgaaggatccggaccgg
aacccctacagtattctggacacctctgagtcggatcaaattgccgatgcagaagcaagc
gagtgcgaacccagttctcggagccgacgctcgcgacgccggcgccctgaatctgacgac
aacacatcactcagcgagaacggcctcgatgagcctaagtctaaacccccacggcaaaac
cgcagccgtcgccggcgcattcggcctcctgaagagaaacagccagtcaccgtggccgat
tttatatcacgtgctgaatcacacagcagacagagaacaccccgagaactgaagaagaat
aaaaaagacttgggtcaggtggaagtcatatctgagcacagcgactccaagcagctgact
aacggccccagtgctgacgcagacgagccgaaaaagacaccacgtgcttccacggaaacg
agcccagacgggaaacccgatgtggccaagccgaacgccgttaacggactctgctga
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