Silurus meridionalis (southern catfish): 124391162
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Entry
124391162 CDS
T08004
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124391162 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
124391162 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124391162 (lsm7)
03041 Spliceosome [BR:
smeo03041
]
124391162 (lsm7)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124391162 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
124391162 (lsm7)
Spliceosome [BR:
smeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124391162 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
124391162
NCBI-ProteinID:
XP_046713515
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All DBs
Position
9:5936347..5939266
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AA seq
103 aa
AA seq
DB search
MADKEKKKKESIFDLSKYIDKTIRVKFQGGREVSGVLKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTAVVLICPHDGMEAIPNPFIQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagagaagaagaagaaggagagtatttttgacttgtcaaagtacatcgac
aagaccatcagagtaaaattccaaggtggacgtgaagtgagtggcgtcctaaaagggttt
gaccctttgctgaacctggtgttggacggtacaattgagtacatgcgtgacccggatgat
cagtataaactgactgaggacaccaggcagctcggcctcgtcgtgtgtcgagggactgct
gtcgtcctcatctgtcctcacgacggcatggaggccattcccaaccccttcatccaacag
caggatggctaa
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