Silurus meridionalis (southern catfish): 124391302
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Entry
124391302 CDS
T08004
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03410
Base excision repair
smeo03420
Nucleotide excision repair
smeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124391302 (rfc4)
03410 Base excision repair
124391302 (rfc4)
03420 Nucleotide excision repair
124391302 (rfc4)
03430 Mismatch repair
124391302 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124391302 (rfc4)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124391302 (rfc4)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124391302 (rfc4)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124391302 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
124391302 (rfc4)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
124391302 (rfc4)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124391302 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
124391302 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_16
AAA_assoc_2
AAA_30
AAA_11
AAA_22
DUF815
AAA_5
AAA_24
Mg_chelatase
AAA_19
SLFN-g3_helicase
AAA_28
Gp44_lid
AAA_14
RuvB_N
DNAX_ATPase_lid
ResIII
Kinesin
AAA_7
Cdc6_lid
AAA_23
Viral_helicase1
14-3-3
AAA_3
STE
Motif
Other DBs
NCBI-GeneID:
124391302
NCBI-ProteinID:
XP_046713742
LinkDB
All DBs
Position
9:14094435..14099694
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGSTQAVKAQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVIAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKT
FAQLTVAGRRSDGKSCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLGNKIQEERLVEICQKENLKYTKEGIDALVKVSEGDLRKAITLL
QSTARLSTEKEITESMVIEIAGVVPPKVIKNLLQTCYKGNFEKLEIAVKNMIDEGYAATQ
ILSQVHDVLLEEKLDDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQQATQSA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttctgaaaggatctacacaagctgttaaagcacagaaggacaaagctaca
gcctcgagcagtggagagaataaacgacagaaaccagtgccatgggtggagaaatacaga
cccaagtgtgtggatgaagttgcttttcaagaggaggtcattgcagttttgaagaaatca
ctagagggtgctgatctcccaaatcttctgttttatggtccacctggaacaggaaagacc
tccactattcttgcagctgcaagggagctttacggccccgagctttaccgacagagagtg
ctcgagctgaatgcctcagatgagagagggattcaggtgatccgggagaaagtgaaaact
tttgctcagctcacggtggcgggtcggcggtcagatgggaaatcgtgtcctccatttaaa
atcataattctggacgaggcagattccatgactagtgcggctcaggctgctctcaggcgc
actatggagaaggagtcgcgcacaacccgcttctgccttatctgcaactacgtcagcaga
atcatcgagcctttgacgtcccgctgctcgaaattccgctttaaacccctcggcaacaag
attcaggaagagcgactggtggaaatctgtcaaaaggagaatctcaaatacaccaaagag
ggaatcgacgcgctggtcaaagtgtccgagggagatctgcggaaagctataacgctcctg
cagagcacagccagactcagcacagagaaagagatcacagagagtatggtcatagagatc
gcaggggttgttccccccaaagtgattaaaaatctgcttcaaacctgctacaaaggcaac
tttgaaaaattagagattgctgtgaagaatatgatagatgaaggctatgctgctacacag
atcctcagccaagtccatgatgttcttctagaggagaaactggacgataaacagaagtct
gtcatcaccgaaaaaatggctgttgttgataagtgtttggtggatggagctgatgaatac
ttgcagctgctgaacctctgctctgtgatcatgcagcaggccacacagagtgcctga
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