Silurus meridionalis (southern catfish): 124391558
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Entry
124391558 CDS
T08004
Symbol
fancd2
Name
(RefSeq) Fanconi anemia group D2 protein isoform X1
KO
K10891
fanconi anemia group D2 protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
124391558 (fancd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124391558 (fancd2)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FANCD2-I complex
124391558 (fancd2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FancD2
FANCI_S2
CCDC53
Motif
Other DBs
NCBI-GeneID:
124391558
NCBI-ProteinID:
XP_046714176
LinkDB
All DBs
Position
1:complement(19876510..19907795)
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AA seq
1436 aa
AA seq
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MMRKKKRASLVSVDEAPALQDVPKAKKSKSTGRPAKSAGVPDSFFGHMLRESGVIMRQGN
TANEIAVDQVVFQKRLQQHLRKNPRYPNVIQEFISGLESHIEEPEIFRNCLLPCVPRCAS
EGDTSSSSFQESLVRMLLGIEMLQTQVINTLFEKLPEFMFEGVGEDGLNIPHLIINQLKW
LDRVVDCRELSSKIMQLVSVAPVEIQRDIISSLPEILEDSQHGDMARDLNALLQENTQLT
VPILDAMSSLNLSSALLSEVRGAVMATVGAVQLEDLPVVVKFILHSISASDANEVVCDLR
KKLELEQCVLSSALQASQSLEKSKMNRGTPSVPACSSKDSVALVLEVIKSAVRFQKTISE
AWLKAIESVTEPEDHKVVDLLVLLILHSTNANQSRRGAERVLKAKVRGGLIHEALLNKTF
RDYSQVMRGYFPSILSLAQGLLRSTDCCVVPFGGHIYKQAFTAFDSYCQQEVVGSLVTHV
CSGVSGEVDVALELLCELVSQKPTEMAQYAVFIKGILDYMDNLSPQQIRRLFHVLSCLAF
GQDQHGSHIQDDMHIVIRKQLSSTVPKYKRIGIIGAVMMVASMAARRDRSEGSQGGTLPK
DTQRQVTTLLELVRSCSEGSAEASALYYDELANLLHNHRLDPLVQAWIGKSVLEDFQEDF
VVDLGPEIPGTVPFTASVMYNLDEDESQGGIAINLLPLMAKDILHKTDSNRDGRHVSPLC
LSSFFRLLRLCEEEQHQGDLEEIDALLGCPLILTNMEVIEKIESLSKAEREFLCSLLFCT
INWFREVVNAFCKLKDPEMKMKVITRLQNITYLQTLLETCLAVSPGFTPPPANFDTDSTE
VLAPAPSVAPTKKAKKESTGKKRKASTSKNTSTEGSQLEEAAEADELQAQDHPEKEAKAG
VSLSSYRPYFRELDLEVLNVLQCGLLSRSVLDTELHSKVREEVQLGPAELVFLLEDMWHK
LDFSLTAAPAKKVPFFKLKTDKAVGFSHLQQKSPKDVATCFVELLETLCTHLENCHNHFQ
TFLTENQGVVDALGVDMNVQQLMSSAYHLLLQVLHTAFSWSGFSHPEQRPLLKRALGVLA
SRLKEKDADLTLEQLIKHSFEYLLNFRSTLPSLNTALILTRLLIVLSQYARSSPSFYREH
TASLAKHLLCQEWVTGSGAKERGNKHSNALQSLLSIYLGHADDVLRAVEEITENGISELI
NASKDASSRSWRTLNRQTFLVYYKVLMAELEKCVRKIPPGKQTDSKEVQSEKLLQWNLAV
RDFHILINMVKVFDSRPVLNVCLKYGRLFLECFLKLGMPLLDFSFKKHKEDVQSLLKTFQ
LSTRQLHHMCGHSKIRQDTALTNHVPALKKHLEQFVYRVKAMLTLNQCQEAFWLGNLKNR
DLKGEEILSQRSQESDDEDEESSQVEEGNEDEESDADEKDNGQQDEEEEEDSDVSD
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggaaaaagaaaagagcatcgctcgtttcagtcgatgaagctccagccttacag
gatgttcccaaagcaaagaaaagcaagtcaactggacgtccagccaaatctgctggtgta
cctgattctttttttggtcacatgctgcgggaatcgggtgtcataatgagacaaggcaac
acagccaatgagatcgccgtggaccaagttgtgtttcagaaaagactacagcagcatcta
agaaaaaatcccagatatcccaatgtcattcaggagtttatatctggcttggagtcacac
atcgaagaacctgagatatttaggaactgcctgcttccatgtgtgccacgttgtgcaagc
gagggagacaccagttcaagctcgtttcaagagagtctggtgcgaatgcttctgggtatt
gagatgctgcagactcaggtcatcaacactttgtttgagaagcttccagagttcatgttt
gagggtgtcggagaggatggtctgaatattccacacctcatcattaatcagctgaagtgg
cttgatcgagttgtggattgcagggaattgagcagtaagataatgcagcttgtgtctgta
gctcctgttgagatccagcgtgacatcatttccagtttacctgaaatactggaggattca
caacatggagacatggccagggaccttaatgccttactccaggagaacacccagctgact
gtacccatcctggatgccatgtccagccttaacctcagctctgcattactgtctgaggtt
cggggtgctgtcatggcgacagtcggcgcagtgcagctggaggatctccctgtggtagtg
aagttcatcttacactccatctctgcttctgatgctaatgaggtggtgtgtgatttacga
aagaagcttgagttggagcagtgtgtgttgtcgtcagcgctacaggcttctcagagcctt
gaaaagagcaaaatgaacagagggacccccagtgtccctgcatgcagcagtaaggacagc
gtggctctggtcctggaagtcattaagtcagctgtgcgctttcaaaagaccatctctgaa
gcctggctcaaggctatagagagtgtcactgagcctgaagatcataaggtggttgacttg
ttggttttgctgattctccactccactaacgctaaccagagtcgacgcggggcagagaga
gtgctgaaggctaaagtgcgaggcggcctcattcacgaagcactactgaataaaactttt
agggattactctcaggtgatgcgcggatattttcctagcatcctgtccttggcgcagggg
ctgttgcgttctacagactgctgtgttgtgccgtttggaggacacatttacaaacaggcc
ttcactgctttcgactcctattgccaacaggaagtggtgggttccctggtcacacacgtg
tgcagtggtgtgagtggagaggtggacgtggctctggagctgctgtgtgaattggtatcc
cagaagcccacagagatggcccagtacgctgtctttattaagggaattctggactacatg
gacaacttaagtcctcagcaaatccggcgtctcttccatgtgctcagctgtttggcattc
ggacaagaccagcatggcagccatattcaggatgacatgcacatagtgatccgaaagcag
ctgtccagtacagtgcctaaatacaaacgtattgggatcatcggtgctgttatgatggtg
gccagtatggcagcacgaagagaccgatcagagggctctcagggaggtacactgcctaaa
gacacacagcgacaggtgactacgcttctggagttggtgcgctcgtgcagtgaaggctca
gccgaggcctccgcactgtattatgacgaactggccaaccttctgcacaaccacagactg
gacccactggtgcaggcgtggatcggcaagagtgtgctggaggatttccaggaggacttt
gttgtggaccttggaccagagataccaggaactgttccattcactgcctcagtcatgtac
aatctggatgaagatgagagtcagggaggaatagccattaacctgctgcccctaatggct
aaggatatactgcacaaaacagacagcaacagagacggcagacatgtttctcctctgtgt
ctgtcctcgttcttcagacttttgaggctgtgtgaggaggagcaacaccaaggtgacctg
gaggagatcgatgctcttctaggctgtcctctcatcctgactaacatggaggtgatagag
aagatagaaagtttgtctaaggcagagcgagagtttctctgctctttgctcttctgcacc
atcaactggttcagagaggtagtaaatgcgttttgcaagctgaaagaccctgagatgaag
atgaaggttattactcgtcttcagaacatcacttacctgcagacgcttttggagacatgt
ttggcagtcagcccgggattcactcctcctccggctaattttgacactgatagtacggag
gttttggctccagcgccatctgttgctccaaccaagaaagcaaaaaaagagtctacagga
aaaaagaggaaagcgtcgactagtaagaacacttcgacagaaggctcacaattggaggag
gctgctgaggctgatgaacttcaggcacaggaccacccggagaaggaggccaaagcagga
gtgagtttgtcctcataccggccgtattttagggaattagacctggaggttctgaacgtt
ttgcagtgtggcctgctctcgagatcagtgctggacacagagctccatagcaaggtacga
gaggaggtacagctgggtcctgctgagttggtgtttctgttggaggacatgtggcataaa
ctggatttcagtctgactgctgctccagccaagaaagtcccattttttaaattgaagacc
gacaaggcagtgggattctcacacctgcagcagaaaagccccaaagatgtcgccacttgc
tttgtcgagctgctagagacattgtgtacacaccttgagaactgccacaaccacttccag
actttcctgactgaaaaccaaggagtggtggatgcactaggtgtggatatgaatgtacag
cagcttatgagttcagcttatcatctcctgctgcaggtcttacatacagcatttagctgg
tctggattctcccatccagaacagcggccactgttaaagcgtgctctgggtgtgctagcc
agtcgactgaaggagaaagatgcagacctaaccttggagcagcttataaaacacagtttc
gaatacctgctgaatttccggagcaccctgcccagcctaaacacagctctgatcctgaca
cggctgctcattgtgctcagtcagtatgcacgatccagccccagcttctacagagaacac
accgcatccctggctaagcatctcttgtgtcaggagtgggtgacaggaagtggagcaaag
gaacgtgggaacaagcacagcaatgcactccagagtctcctcagtatttatctaggacac
gctgatgatgtgctgagagcagtggaagagatcacggaaaacgggatctcagagctaata
aacgcctcaaaagacgcaagctctcgcagttggcgcacactcaacaggcagactttcctg
gtgtattataaggttttgatggcggagctggagaagtgtgtacgaaagatacctcctggg
aaacagacagacagcaaagaggttcaaagcgaaaaacttctacagtggaacttggctgtc
cgggatttccacattctcattaacatggtcaaggtttttgatagcagaccagtgctcaat
gtgtgtttaaagtatggtcggcttttcctcgagtgcttccttaagcttgggatgcctctc
ctcgacttcagctttaaaaaacacaaggaagatgttcagagtttactgaagaccttccag
ctcagcacaaggcagcttcatcacatgtgtggccactcgaagatccgtcaggacaccgcg
ctaaccaaccacgtgccagccttgaaaaagcaccttgagcagtttgtgtatcgtgttaag
gcaatgttgactcttaaccagtgccaggaggctttctggctgggcaacctgaagaacaga
gatctaaagggtgaagagattctctcacaacgctcacaagaaagtgatgatgaggatgaa
gaatcttctcaggtagaagaggggaatgaggacgaggaaagtgatgctgacgaaaaggac
aatgggcagcaggatgaagaggaagaggaagactctgatgtgtcagactga
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