Silurus meridionalis (southern catfish): 124391899
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Entry
124391899 CDS
T08004
Symbol
tdrd12
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124391899 (tdrd12)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
124391899 (tdrd12)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124391899 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
Helicase_C
CS
Motif
Other DBs
NCBI-GeneID:
124391899
NCBI-ProteinID:
XP_046714530
LinkDB
All DBs
Position
10:complement(8955506..8981392)
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AA seq
1382 aa
AA seq
DB search
MEIGELLELEIIKVEDPGCIWGQIVKGQGVQVNNPQDYENLHVKMNFFYHKVDLDVKKLK
PSSLEKEQVCVVFWPELRSWCRAKVESLFLGSATSQATCFLVDHGERVVVSVDDVRSPLD
KFLQLPFRLLRFKLARIHPMRLKVQICNMTAELVSSSHWDSSATKYLHNLLQASTLVEAV
SCGTQDDCTAVELYLTIKNVKICVNDDLVVKKFAYFSSETALEDQSGCVDRSPVSLAWDI
FSSPQEILKINSCCAVRSGPSHFLTRKSINDLIPEMDHVKSQVTAVNSVFPTGALAALEN
GESDGQEIFAVHHKGGETKSTEKGNEQTGDFKETYTESTLAEELSEKLNLFRFQMFLNPF
SDSQSIKHDINEDIQKSSSETSSETAEVQNDLSSTSVIPTMQKEPTLRQETEQTSNTGQF
ACDRLLQLLNPDPINPDQESLDDNVTCWKPNMTGVLVHSAVSINPCRNMTRAPITEQFRK
FLFRRSYTGPGLAESYCWPSVARGCDTLLISHRGEDPLTYIPPLLTQLQLASLHXSITAH
TGPIAVIVCPGWEKVGSVLELLEESQAAVNLHPVDVLVGECKNEAEQIKIQNNCQLLVTT
PFSLARLLEVQFFHFYRLCHLVLDEAHELISRAPEQMNAILQHYQKVVSREERTACVQQL
VVVSRQWCGELETVIRNHMFNPCIIITVPEEAALYGAVQQTILMCVDCNKTSLLLSSLDF
SPSVPQKTLIITNSTEEVEHVYKALSSKAAFSLKVHEGLTHQFDVVVEQWRKDIGPGTQV
ILVTTNDCMRSLGIRDATCVVHYGFPSSPKLFGNRMFCMRENFQNLVCKNQFDGSSPAAR
SVLLISEQNARHVSGLLRYLKRTDSLLPPELMQFAQGVQQAKEQWKADRPLCSYLKTLGF
CRDSFMCPDRHKINKFLDCPQHLDSGTVLTASVYYGRIVDQKENGYEKLAAAMKSHYAKE
RLCAKEVIEGGFYAVQEDDVYHRVCVTKVPEKGRQLFNSVKARFVDEGRIQEVKSFELLQ
LPLEFQSLPDQAVEIVLCRAQPIDGEIDWNPKVTRAISQKIKGKKHHAKVVMRLGNTLWV
DPMVYMTRMPGLKIFINEYNVHSEIVATGMGTINPKHLEMLKLLCQGEEASADVELSESN
GCESEVVTLEQRVQVQSAEAHTSQMKNGINISEHSDTKPLQNPENTNHITEPNGRQNKDS
LETCLDAEHMVGFLPQNWTPALSNSSVEDNCKIKNEALHTGCRQDIPVPKSSHPQIKWFQ
DEESVTLKIKLINPMMQKCEFFSLRVLYSAYVNSDHYSASLELHSEIRTQQCSWQMECNE
PVIRLVKKEKGEWKTLLKYKSAFVSYDFDHIEVEEPSPSNGSWFMGNTGEEGFYVTSESE
SD
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggaaattggagaattgctagaactggaaataatcaaggttgaggatcctggatgcatt
tggggtcaaattgtgaaaggacagggtgtgcaggtcaataatcctcaagactatgagaac
ctacatgttaaaatgaatttcttctatcacaaagtcgacctggatgtgaaaaaattaaaa
ccatcgtcattggagaaggaacaggtgtgtgtagtgttttggccagagctaaggagctgg
tgcagggccaaagtggagtctctgttcttgggatcagcaacgagtcaggccacatgcttc
ttggttgaccacggagagcgtgtcgttgtcagcgtagatgatgtaagatctcctcttgat
aagttcctgcaactgcccttccggctgctaagattcaaactggctcgcattcacccaatg
agacttaaagtacaaatctgcaacatgacagcagagctagtttcatccagtcactgggac
agctctgctacaaagtacctccacaatcttctacaagcctctacattggttgaagctgtt
tcttgtggaacacaagatgattgcacagctgttgagctgtatttgaccatcaaaaatgtg
aagatctgtgtaaacgatgatttggtggtgaaaaagtttgcatatttctcaagtgagacg
gctctggaggatcagagtgggtgtgtcgatcgctctcctgttagcttggcctgggatatt
ttcagcagtcctcaagagattctcaaaataaatagctgctgtgcagtgaggtctggtcct
tcacacttcctaaccaggaagagcattaatgatttaattccagaaatggatcatgtgaag
tctcaagtgactgctgtgaattcagtttttcccactggagcactagctgctctagaaaat
ggggagtctgatggacaggagatatttgcagtacatcacaaaggtggagagaccaagagc
actgaaaagggcaatgaacagactggggactttaaggaaacatatacagagagtaccctt
gcagaggagttgtctgaaaaactaaacttgtttagatttcagatgtttttgaaccccttc
tcagattcacagagtatcaaacatgatattaatgaagatattcaaaagtcttcaagtgaa
acttccagtgaaacagcagaagtacagaatgacctcagtagtacaagtgtcatcccaacc
atgcagaaggaaccaactctcagacaagagacagaacaaacaagcaacacaggccaattt
gcttgtgacagattgctacagttgctgaacccagatccaataaacccagaccaagagtca
cttgatgataatgttacatgctggaaaccgaacatgactggagttttggtgcactcagct
gtctccatcaacccctgtcgaaacatgacccgggctcccatcactgagcaattccgtaaa
tttctgtttaggagaagttatacaggaccaggtctggctgagagctactgctggccatct
gtggctcgaggttgtgacacattgctgatatcccaccgtggagaagatcctctcacctat
atcccacctctgttgactcaactgcagttagcctctttgcatnagagcatcaccgcacac
actggacccatagcagtgattgtgtgtccgggttgggaaaaggtcgggtcagtgctggag
ctactagaggagagtcaggcagcagtgaatcttcatcctgttgatgtcctggttggtgaa
tgcaagaatgaggctgaacaaatcaagattcagaacaactgtcagttgctagttaccacc
ccatttagcctggcaaggttgctggaggtgcagttcttccacttttataggctctgccac
ctggttctagatgaggctcatgagctcatctcaagagctcccgaacagatgaatgccatt
ttacaacattaccaaaaagtggtgtccagagaggagagaactgcgtgtgtgcagcagctt
gttgttgtttccagacaatggtgtggagagctggagactgtgatccggaatcacatgttt
aacccctgcatcattattacagtgccagaagaggcagcattatacggtgcggttcaacag
acaatactgatgtgtgtggactgcaataagacctcactgctgctcagctctttggatttc
agcccctctgttccccagaaaaccctcatcattactaactctacagaggaggtggagcat
gtgtataaggctctcagcagcaaagcagcattctctctcaaagttcacgagggacttact
caccagtttgatgttgtggttgagcagtggaggaaagacattggtccaggcacacaggtt
atcttggtgaccaccaatgattgcatgaggtccctgggtatcagagacgccacatgcgtg
gtgcattatggttttcccagctcccctaaactgtttgggaaccggatgttctgcatgcga
gagaattttcagaatcttgtctgtaagaatcagtttgatggctcctctcctgcggcacgt
tctgtgttgctgatctcggagcagaatgctcgtcatgtgtctggtctgctgcgctatcta
aagcgtacagactctctactgccaccagagctcatgcagtttgcccagggagtccaacag
gccaaggaacagtggaaagctgaccgacctctctgcagctatctaaagaccctgggcttt
tgcagggacagcttcatgtgcccagacagacataaaatcaacaaatttcttgactgtccc
caacacctagactctgggactgttttaactgcaagtgtttactatggacgtatcgtggac
cagaaggagaacggttacgagaaacttgctgctgcaatgaagtcacactacgctaaagaa
cggctttgtgcaaaggaagtgatagagggaggcttttatgcagtgcaggaagatgatgta
tatcatagggtgtgtgtgaccaaggtgccagaaaagggacgccagctgttcaacagtgtc
aaagctcggtttgtagatgaaggacgtatacaagaagtgaagtcatttgaactgctgcag
cttcccctagagttccagagcttgccagatcaggctgttgaaatcgttctgtgcagggcc
caacccattgatggagagatcgactggaacccaaaggttacccgagctataagtcagaaa
atcaaaggaaaaaaacatcatgccaaggtggtaatgcgtttgggcaacacgctatgggtc
gatccgatggtatacatgacacgtatgccaggcctaaagatctttataaacgagtataat
gtccattcagagattgttgccactgggatgggaaccataaaccctaagcatttggagatg
ctcaagttactgtgccaaggagaagaggcttctgctgacgtggagcttagtgagagtaat
ggatgtgaaagtgaggtggtgacactggaacagagggttcaggtgcagagtgcagaagct
cacaccagtcaaatgaagaatggaatcaatatctctgaacattcagatactaaaccatta
cagaaccctgaaaatacaaaccatatcactgaacctaatggaagacaaaataaggactct
ttggaaacctgtctagatgctgaacacatggttggatttttacctcagaactggacccct
gctctttctaacagctcagttgaagacaactgtaaaataaaaaatgaagccttacacact
ggctgtagacaagatattcctgtacccaaaagttctcaccctcagataaagtggtttcaa
gacgaagagtctgtcactcttaaaatcaagcttataaaccccatgatgcagaagtgtgaa
ttcttctctctccgagtgctttacagtgcctatgtgaacagtgaccattacagtgccagt
cttgagctgcacagtgagatcagaacacagcagtgctcatggcagatggagtgcaatgaa
ccagtaatcagacttgtgaagaaagagaaaggagaatggaagacactacttaaatacaag
agtgcttttgtaagctatgattttgaccacattgaagttgaagagccttctccttcaaat
ggaagttggttcatgggaaacacaggagaagagggcttctacgtgacctctgagagtgag
agtgactga
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integrated database retrieval system
