Silurus meridionalis (southern catfish): 124392295
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Entry
124392295 CDS
T08004
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
124392295
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
DHHW
Motif
Other DBs
NCBI-GeneID:
124392295
NCBI-ProteinID:
XP_046715072
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All DBs
Position
10:22677791..22703474
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AA seq
1044 aa
AA seq
DB search
MERGHDPIKRGISWTGQSTTTHAATILDETGTKSWDKEEHSWVKAKPLLISSSGDLVQKT
NLGRSASLSEKELKEARTRSQIIATQLTVPSNCKSRGVQLFNRRRERVNAFTFTSVGGGE
EGSHEEPCDELESPSPSTLTWNKECSTESRIKDFKHRRSETQLQWPTTVITSKGHKMEGA
VEVANEVGDRVEERHFLPVIDNDKDEEIPEHEEAGKDVTFESDNSPVVPNPNQERQQDVQ
LTRAYESPLEALKAIQNGNHSTKTNSKVDNSATKQSTITNRTARPFFSPVEVTSTEAIHS
PDIPLTPAYSTSPPPAQYDPTATTYSKQEPLTFVKPAFSVSSRQVFSPPPPAPSYPTPPL
PSYMSLPPSIPSDPPPLSAMSPPPSPAYYTPLTIPSSTYANQLMADRRTVTPNRTGILEE
GRGRRSNRKSMFTFQEKPKLSPNPELLSLVQTTDEKKKSRGQETHQEEEQLALGAEASNF
LVKDESGVEEALVPEWASTLKSSRTQPRVEHKLEQALSSASGKGAELFAKRQSRMEKYVH
ENAEGLRSPSPTTSLPPSWVYPSNMPGRVKAIINASNITAEISKTFQAQQVTQKKNTPAK
LPVPPPVQENPTLENGCTRVEMELSRHKPYQINSSLFILNPTKDPKSTLPRAAPPPKSVV
MGSSYPRQTSLPSTPIPSQYDSHAYRSAHCFSPPMMPLNSVSRRVTSPMSDAAPERVTSP
RSSMQAPKPTFSTKKAGITPQGKEDSLVVSHINSPSSPVPWTPNLFRRHSSTDKSPGAGW
TPISQHSSLVTSPPPRTIHIPINSVASSPPAKTIHNSTTCSPISGSIHNPVTSSPTPRSI
HNPISPPPNPRHFNSPVTSSTNTQSMSSSPSPKPYKSSVAIISLSKPTNIHTATTPVSPP
WETRGQSPIPLQDTKANHRLIAKNIINAAKRKNSLSPRALSGHGLLMSPVSSTILPFETK
PQSPFQSRALGAQSPTFTSPPATPTQLVRSPLRLYTSRSLTDSDASLESEDSGMRSPGVR
SYNTCPRGWSGSLRLKRGAMSEDL
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaggacatgaccccatcaagagagggatcagctggactggacaaagtaccacg
acccatgctgccaccatcttggatgagactggaaccaagtcctgggacaaggaggagcac
agctgggtcaaagcgaagcctctactgatctccagctctggtgacctggtgcagaaaaca
aatcttggccggagtgccagtttgtcagagaaggagctgaaagaagcgaggacgcgaagt
cagatcattgccacacaactgactgtgccgtcgaactgcaaatcccgaggtgtccagctt
ttcaaccgtcgcagagaaagagtaaatgcctttacattcacaagtgttggtggaggagaa
gaaggaagccacgaagagccctgcgatgaacttgagtctccttctccaagcacattaaca
tggaacaaggagtgctcaactgagagccggatcaaagattttaaacacagaagaagcgaa
acgcagctccagtggccgactaccgtaataaccagcaagggacataaaatggagggggca
gtggaggtggcaaatgaagtgggagatagagtggaagagagacattttctccctgtaatt
gataatgacaaggatgaagaaattcctgagcatgaagaggcagggaaggatgtcaccttt
gagagtgacaacagtcctgttgttcctaatcctaaccaagaaagacagcaggatgtacag
ctaactagggcatatgaaagccctctggaggctctcaaagccatccaaaatggaaaccac
agcactaagaccaacagcaaagtagacaactcagcaacaaagcagtcaaccatcacaaac
aggacagctcgaccctttttctcccctgttgaggtaacctcgactgaagccattcactct
ccagatatccctctgaccccagcttactccacttctccgcctccagctcagtatgaccca
actgctactacatattctaaacaagaacctctaacatttgttaaaccagctttttcagtg
tcctccagacaagtgttttctcctccacctccagctccttcatacccaaccccacctctt
cccagctacatgagcctacctccatctatcccatctgatcctcctccactgtcagcaatg
tctcctccaccatcacctgcctactatactcccttaaccataccaagctccacatatgcc
aaccaactaatggctgacaggaggacagtgacgcccaatcgcacaggtatcctagaagaa
ggcagaggtagacgatctaaccgcaagtcaatgtttacgtttcaagagaaaccaaaatta
tctccaaatcccgaactcttgtctttggtccagactacagatgaaaagaaaaaaagcaga
ggtcaggaaacacatcaggaagaggagcagctggctctaggagcagaggcttctaacttc
ttggtcaaggatgaaagtggtgtggaagaagctttagttccagagtgggcatcgacacta
aaaagctccagaactcaacccagggtagagcacaaactcgagcaagccctgtctagtgca
tctggcaaaggagcagagttgtttgccaaacgccaatccagaatggagaaatatgttcat
gaaaatgcagagggattacgatcaccttctccaaccacctccctgcctccctcttgggtg
tatccatcaaacatgcccggccgtgtcaaggctatcatcaatgcctccaacatcactgca
gagatttccaagactttccaagcccagcaggttacacagaaaaagaacaccccagcaaag
ttaccagtaccacctccagttcaagagaatccaaccttggagaatggctgcaccagagtg
gaaatggagctgtcccggcacaagccttaccaaatcaactcatcgctgttcattctcaac
ccaaccaaggaccctaaaagcactcttcccagagcagcaccacctcccaaatctgtggtt
atgggatcgtcgtacccccgtcagacctctcttccatccacgcctatcccaagccagtat
gactcgcatgcctacaggtcagcacattgcttctccccacccatgatgcctctcaattcg
gtgagcagacgagtgacctcacctatgtctgatgcagcgcctgaacgtgtcacttctcca
cggtcatccatgcaagctcccaagcccaccttctctactaagaaagctggaattacccca
cagggcaaggaagactctttggttgtgtcacacatcaacagccccagcagcccagtgcct
tggacaccgaacctgtttcgccgccacagcagcacagataaatctccaggtgcagggtgg
acccccattagccagcacagctctctggttacctcgccaccacccagaaccatccatatc
ccaatcaactctgttgcctcttcaccaccagcaaagacgatccataattccacgacttgc
tccccaatctctggctccattcataacccggtcacttcctctcctacaccacgttctatc
cataaccccataagccctcccccaaacccaagacacttcaatagcccagtcacttcatcc
acaaatacacagtcaatgagctcctccccatcaccaaaaccctataaaagttctgtcgcc
atcatttcattgtccaagcccacgaatatccatactgccaccactcctgtatctccacct
tgggaaaccaggggccaatcccccatccctcttcaagacaccaaggccaatcaccgcctt
atagctaagaacatcatcaatgcagccaagcgcaagaacagcctatcgcccagggctcta
agtggccatggtcttcttatgtctccagtaagcagtaccattttgccctttgagacaaaa
cctcagagtccctttcagtctcgagctctaggtgcccagtcacccacgttcacaagcccc
ccggccacccccacacaactggtccggtctcccctgcgtctctacacctctcgatcactt
actgattcggatgcctcactggaatcggaggattctggaatgcgttcccctggggtccgg
agctataacacttgccctcgtggctggtctggaagcttgaggctcaaaagaggtgcaatg
tcagaagacctgtag
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