Silurus meridionalis (southern catfish): 124392296
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Entry
124392296 CDS
T08004
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124392296
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Others
124392296
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
NDNF
Motif
Other DBs
NCBI-GeneID:
124392296
NCBI-ProteinID:
XP_046715073
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Position
10:complement(21427319..21510791)
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AA seq
1899 aa
AA seq
DB search
MQVRGIRALSPLLMLALTSLLPRPTHGQDRGRVILATTTTFQSKNASSEDTVPAPRRLRY
KELGSGMLGVSWKEPKGEFDSYRFIYSTGSGEREREVQVSKEMSRTVITDFDNSKEYRFK
VFSVSGGQLSKPLLGTYEASRSEVSDTRPLTHSTKPVSEPERGNEIIEEISFTCTTPAIA
DIVILVDGSWSIGRFNFRLVRTFLESLVTAFSISSDQTRIGLAQYSGDPRIEWHLNTHST
KEEVINAVKNLPYKGGNTLTGLALMYILENSFKPESGSRTDVPKIGILITDGKSQDDVIG
PAQSLRDAGIELFAIGVKNADENELRMIASPPEETHMYNVADFNVMSSIVEVLTRIVCQR
VEHLNREIKGESVSFTTPDAPSDLLTSEVTARSFRVSWTHAPGTVEKYRVVYYASRGGKP
EEVVVNGDQNSVVLQHLNSVTEYQVAVFAIYSNSASEGLRGSETTLALPMVNNLDLYDIT
HNSMRVQWVAAEGASGYMILYAPLSDAGSSDEKEVKVADSVTEIELDGLTPATEYTVTVY
AMYEDEASDPRTSQETTLPLSPARDLRITDVTHNSAKLSWQASSRKVKSYRIMYVKTDGV
QTNEVDVGRVTTKLLTDLTSQTEYTVAIYAIYDEGQADPLTDSFSTKWVPVPVNVRSSDV
ATDSFRVSWQHAASDISLYRLSWMPANGGETREMVVGGNLNSYVITGLRPLTEYEVTLTG
IYKDKAESEKVVLGETTVARTTTVATTTTSTTAEVVRTGVRGLQLSDFTTFSMGASWELL
GSNVRQYRVSYISARGDRAEQVIMVPGNQNSVVLQPLLSDTEYRVSVTAIYADGEGTAVT
RSSRTLPLIAPKNLKVSEEWYNRFRITWDTPPSPTMGYRVIYQPVSVPGRALETFVGDDV
NTMLILNLVSGTEYSIKVIATYTTGSSDALTGRAKTLYLGVTNLNTYQVRMNSMCTQWQP
HSHATQYRVSIESLLNGQKQEVRLDGSETRHCFNDLNPNTQYKITVYALLQEAEGPAVTI
MQKTLPVPTSPPTRPPTTSPIPTIPVAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFL
YSTAGALDEIGPGGTQVAIAQFSDDARTEFKLNSYDNKESLLDAIQRISYKGGNTKTGRA
MQHVKDAVFTRAGGTRRGVPKVLVVLTDGRSQDDVNKISQEIQMEGYIVFAIGFADADYG
ELVSIGSKPSERHVFFVDDLDAFRKIEEKLITFVCEAASATCPSVAMSGSTLPGFRMMEM
FGLVEHLYSNVAGVSMEPGTFNSFSSFRLASDAMLAQPTRFIHPEGLPSDYTITVVFRLL
PQTPQEPFALWEILNSRNEPLVGIILDNAGKTLTFFNNDYKGDFQTVTFEGAEIKKLFYG
SFHKLHIAVSKTLAQVMVDCKLAEEKIINAAGNITIDGMEVLGRMVRSRGDRDNSAPFQL
QLFDIVCSTSWARRDKCCDLPSLRKEADCPALPRACTCSQDSKGPPGPPGPLGGPGIRGS
RGDRGEPGPVGPVGPVGESGVPGPQGPPGPQGHSGRSIRGPPGGPGERGEKGEAGPRGTQ
GVPGNPGSAGRDGPPGPRGLPGNDGPQGRTGPPGNIGGPGAPGAPGQNGPPGPTGEQGPP
GLLGSKGEKGERGDAQSTSSVQAIARQVCEQLIQTHMSRYNSILNHVPRQQTVSIRSVPG
PPGEPGRPGPPGQQGEQGPPGRPGFPGNSGDNGEPGARGLPGEKGEKGAPGVGVQGPRGP
SGPPGPPGEGRSGSPGPSGRPGNPGVSGRPGTPGPVGPAGPPGYCDPNSCGYNVAVVEDQ
QQFVHVPSAAQPLPNIRPRRGGRSGGGSVQQLREAAPLLPAQLPRATPHRARRNDHSRGR
RRRAALTRHAASDSQHGRAGAEKKDKDERSVLNTRSHHI
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgaggggcatcagggcattaagtccacttcttatgctggcactaacatcactt
ctccccagaccaacacatggacaagataggggccgagttatcctggctacaacaacgact
tttcagtctaaaaatgcttcatcagaggatacagtgcctgctcctagaagattgcggtat
aaggagttaggctcaggcatgctcggtgtgtcctggaaggaaccaaaaggagaatttgac
agctacagattcatctatagcactggctcaggagaacgagagcgagaagtgcaggtgtca
aaggaaatgagcagaactgtgatcacagactttgataacagtaaagagtacaggtttaaa
gtcttctccgtcagtggcggtcagctgagtaaaccactcctggggacatatgaagcatca
agatctgaggtgagtgacaccagaccactgactcacagcacaaagccggtcagcgagcct
gagcgaggaaatgagataatcgaagagatttcatttacgtgtacgactccagccatagct
gatattgtgattctggtcgacggctcatggagcatagggcgctttaatttccggctggtt
cgcacgttcctcgagagtctggtgacagccttttccatcagctcggaccagacgcgtatc
ggtttggctcagtacagtggtgatccaaggattgagtggcacctcaacacacactccaca
aaagaagaggtcatcaatgctgtgaagaatttgccatataagggaggaaacacgctgaca
ggtctagccctaatgtacattcttgagaacagctttaagcctgagtcgggatctaggaca
gatgttccgaaaatcggaatcctgatcactgatgggaaatctcaggatgatgtcatcggc
cccgcccaaagtctcagggatgcaggaatagaactgtttgccattggtgtgaagaacgct
gatgaaaatgagctgagaatgattgcgtctcctccggaagagacccacatgtacaacgtc
gcagactttaatgtgatgagctcaatagtagaagttttgaccaggatcgtctgccagcgt
gtggagcacctcaacagagagatcaaaggtgaatcggtctcctttacaactcctgatgca
cccagtgacctcttgacctctgaggtgacagctcggagtttccgtgtgtcctggacccat
gctcctggaacagtggagaaatatagagtggtgtactacgcctccagaggaggcaagcca
gaggaggtggtggtgaatggtgatcagaactcggtggtcctccagcatttgaactctgtg
actgagtaccaagtggctgttttcgccatctacagtaactccgccagcgaaggtctgaga
ggcagcgagaccacgttggccttgcccatggtaaataacctggatctgtatgacatcaca
cacaatagcatgcgggtacaatgggttgctgcagaaggggcttctggatacatgatcctg
tacgcccctctgagtgatgcaggctcatctgatgagaaggaggttaaagtagctgacagc
gtaactgagattgagctggacggtctgacacctgcaaccgagtacactgtcacagtctat
gccatgtacgaagatgaagccagtgacccccggacaagccaggagaccacacttcctctt
agtccggctcgagatctgcgtatcactgatgtgacccacaactccgctaagctcagctgg
caggcctcgtcgcgtaaagtgaaaagctaccgcatcatgtatgtgaagacggacggagtc
cagaccaacgaggttgatgtgggtcgagttactacaaagctgctaactgacctcacctcg
cagacagagtacaccgtggcaatctacgccatctacgatgagggacaagccgatcccctc
acagacagcttctcaacgaagtgggttcctgtcccggtgaatgtgaggagcagtgacgtg
gctacagacagtttcagagtgagctggcagcatgcggcgtctgacatttccctctacagg
ctctcctggatgccggccaacggaggagagaccagagagatggtggttgggggtaatctg
aattcctatgtgattacgggtctgaggccactaactgagtatgaggtcacactcactggc
atctacaaagacaaagccgagagcgagaaagtcgtgctcggtgaaactacagttgctaga
acaacaacagtggctactacgaccaccagcacaactgcagaagtggtcaggacaggggtg
cgaggtcttcagctcagtgactttactaccttcagcatgggcgcatcgtgggaactactg
ggctcgaacgtgcgtcagtacagagtgtcctacatttcggcacgtggtgacagagctgaa
caagtgatcatggttcctggcaatcagaactcggtggtgctgcagccgttgctttcagat
acagaatacagagtgagcgtgacagccatctatgcggacggggaaggaaccgccgttaca
cgttcctctcgcacactgcctctcattgctccaaagaacctgaaagtgtcagaggagtgg
tataatcgcttccgcatcacctgggacacccccccctctcctacaatgggatacagggtc
atctaccagcctgtctcagtaccaggccgagctctggagacattcgttggtgacgatgtg
aacaccatgctgatcctaaacctggtgagtgggacagagtacagcataaaggtcattgcc
acgtacaccacaggctccagcgacgctctcaccggcagagcaaaaacactatacctaggt
gtaactaatctgaacacctaccaggtacgcatgaacagtatgtgtactcagtggcagcct
cattcccatgccacccagtaccgcgtgtccatcgagtccctgctcaatggccagaagcag
gaagtgaggctggatggctccgaaacaaggcactgctttaacgacctgaatccaaacaca
caatacaaaatcactgtttatgctctgctacaggaggcagagggccctgctgtgaccatc
atgcagaaaacactcccagtgcccaccagtcctcccaccaggcctcctaccacctcacca
atccctaccatccctgtagctaaggaggtttgcaaagccgcaaaggcagatctggtgttt
ttggttgatggctcatggagcatcggtgacgacaacttcctaaagatcatccgcttcctg
tatagcacagccggagcgctggatgagatcggacccggaggcacgcaggtggccatagcc
cagttcagtgatgacgctcgcaccgagtttaagctcaactcatatgataacaaggagagt
cttctggacgccattcagaggatttcatataaaggaggcaacactaaaacaggaagagct
atgcagcatgtgaaggatgcggtcttcaccagggccggaggaaccaggaggggcgtgcct
aaagtactagtagtgctgacggacggccgttcccaagacgacgtcaataaaatctcccag
gagatacagatggaaggttacatcgtgtttgcgatcggttttgcggacgccgactacgga
gagctggtgagcatcggcagcaaacccagcgagaggcacgtgttctttgtagacgacctt
gacgctttccggaaaatcgaagaaaaactaatcacgttcgtgtgtgaggctgcatcggcg
acttgtccttctgtagcaatgagcggaagcacattaccaggttttagaatgatggaaatg
tttggactggtggagcatctgtacagcaatgtggccggtgtttccatggagccaggaacc
tttaacagttttagtagcttcagactggccagtgatgccatgctggcacaacccaccagg
ttcatccaccctgagggtctgccatctgattacacaatcaccgtggtgttccgcctgctt
cctcaaaccccccaggaaccctttgcattatgggaaattctcaacagcaggaatgaaccc
ttagtgggtatcatcctagacaacgcagggaaaacactgacattcttcaataacgactac
aagggtgattttcagaccgtaacatttgagggtgctgagattaagaagctcttctacggc
agtttccacaagttgcatatagctgtgagtaaaacactggcacaggtgatggtggactgt
aagctggctgaagagaagatcattaacgctgctggaaacatcactattgacggcatggag
gttcttggaagaatggtccgatcccgtggagacagggacaactctgcaccgtttcagctc
cagttgtttgatatagtgtgtagtacatcatgggctcgtcgagacaagtgctgtgatctt
cccagtttgaggaaggaggctgattgtccagcactgcctcgagcttgcacatgcagtcaa
gacagtaaaggccctcctggtcctcctggacctctgggaggtcctggtattagagggtca
agaggagatcgaggagaacccggccctgtgggtccagtgggtccagttggagaatcggga
gtaccaggacctcagggcccccccggcccccagggacacagcgggcgatctatcagaggc
cctccgggtggtccaggcgagagaggggaaaaaggtgaagcaggacctcgaggtactcag
ggtgtcccaggaaacccgggatctgcaggacgggatggccctccaggacccagaggtttg
ccaggcaatgacggaccacagggcagaacagggcctccaggaaatataggaggaccagga
gctccaggggcaccgggtcagaacggccctccaggacccactggcgaacaaggaccccca
ggtctcttaggttcaaaaggggagaagggagaacgcggggatgcacagtctacttcatca
gtccaagccattgccagacaagtgtgtgagcagcttatacaaactcacatgtcccggtac
aactccattctgaatcacgtcccgaggcagcagacggtctcgatacgcagtgttcccggg
cctccaggtgagcccggtcggcccggtcctccaggacagcaaggagagcagggtccgccc
gggcgtcccggatttccgggaaatagtggagacaacggggagcctggagccagaggtctt
ccaggtgagaaaggagaaaaaggagccccaggtgttggtgttcagggtcccagaggtcct
tcagggcctccaggtccacctggtgagggaaggagtggtagccctggtccatctggccgc
cctggtaaccctggtgtttctggtagaccgggcactcctggaccagtaggaccagccgga
cctccaggctattgtgatccgaactcctgtggatacaatgtggcagttgttgaagaccag
caacagtttgtacatgtccccagtgcagcccaacccctaccaaacatacggccccgacga
gggggaagaagtggaggaggatccgtacaacaactacgggaggcagcacccctactacca
gcccaactaccccgagccacgcctcatcgagcccgaagaaatgatcatagtcgaggacgc
agaagaagagctgcgctcaccaggcatgcagcgtctgactcgcagcacggaagagcagga
gcagaaaagaaagacaaggatgagcgctcagttctgaacacgagatcacatcacatttaa
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