Silurus meridionalis (southern catfish): 124392314
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Entry
124392314 CDS
T08004
Symbol
irf7
Name
(RefSeq) interferon regulatory factor 7 isoform X1
KO
K09447
interferon regulatory factor 7
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04620
Toll-like receptor signaling pathway
smeo04621
NOD-like receptor signaling pathway
smeo04622
RIG-I-like receptor signaling pathway
smeo04623
Cytosolic DNA-sensing pathway
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124392314 (irf7)
04621 NOD-like receptor signaling pathway
124392314 (irf7)
04622 RIG-I-like receptor signaling pathway
124392314 (irf7)
04623 Cytosolic DNA-sensing pathway
124392314 (irf7)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124392314 (irf7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124392314 (irf7)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
124392314 (irf7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
MH2
Motif
Other DBs
NCBI-GeneID:
124392314
NCBI-ProteinID:
XP_046715144
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Position
10:complement(15353369..15357926)
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AA seq
420 aa
AA seq
DB search
MSVANSAVRPQFGQWLLEQVQSGRYDGLYMTDRDTFRIPWKHNSRKDCGDEDNKIFREWA
VVSGKIIEYPNDKAKWKTNFRCALNGLPQFKMIHDNSKDSENPHKIYRITCPENNQQCPS
IHIEDLYSSTNNQCEKMEYDLPNQMVALHLNQQHTEIQCWPASQQPLQNYSVPQMPLMQQ
HCLPNNMPVSAPSLAQQPYNTVQQSFNLPSINELEISIHYRKTEMLKRQYTAQHIQLHSQ
CDLSQLSGMSLPFPSTEELTDHKQVQFTKRLLDNIKRGLLLQVHPLGIYGFRQDKCNVFV
STCDPAEIQNPEPRKLPQNQYVQLFSFDKFKQDLMDFKENRRGSPEYTIYLCFGEKFPDG
KPLERKLIVVKVVPLICRELHKIAQLEGASSLQNDNISLQISHSSLYELIEATFSPPPAV
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcaaacagcgcagtgcgaccacagtttggacagtggctcctagagcaagtg
caatctggacgctacgatggactttacatgaccgacagagacactttccgcatcccgtgg
aaacacaactcgaggaaagactgcggagacgaggataacaaaatattccgagaatgggct
gtggttagtggtaagatcattgagtatcccaatgataaggcaaaatggaagaccaacttc
cgctgtgccctcaacggtttgccacagttcaagatgatccatgacaactccaaggactca
gagaatccccataaaatctatcgaatcacgtgtcctgaaaacaatcagcagtgtccaagc
attcatattgaagacctgtacagctccacgaacaaccagtgtgaaaaaatggagtatgat
ttgccaaaccagatggtcgccttgcatctaaatcaacaacacacagaaatacaatgttgg
ccagcctctcaacagcctttgcaaaactactctgtgccccaaatgccacttatgcagcag
cattgtcttccaaataacatgccagtttcagcaccatctttagcacagcaaccctacaat
acagtgcaacagtctttcaacctgccttccataaatgagttggagatctccattcactac
agaaaaacagaaatgctgaagaggcagtatacagctcaacacattcaactccactcacag
tgtgatctctcacagctgagtggcatgtccttgcccttccccagcactgaggagctcact
gaccacaaacaggtccagttcacaaagcgtctcctggacaacatcaaaaggggcctgctg
ctgcaggtccaccccttaggcatctatggcttccgccaggacaagtgcaatgtgtttgtc
agcacctgcgaccctgctgagatccaaaacccagagcccagaaagctgccccagaaccaa
tatgtacagctattcagctttgacaagttcaagcaagatctcatggacttcaaagagaac
agacgtggatcccctgagtacaccatctatttgtgctttggagagaagttcccagatgga
aagccactggagagaaagctgatcgtcgtgaaggtcgtgcctctaatttgtcgtgagctt
cataagatagcacagctggaaggagcctcatctctgcaaaatgacaacatcagcctgcaa
atctcccacagcagcctgtatgaactgattgaagccactttctcaccacctccagcagta
taa
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