Silurus meridionalis (southern catfish): 124392322
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Entry
124392322 CDS
T08004
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124392322 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124392322 (roraa)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124392322 (roraa)
Nuclear receptors [BR:
smeo03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
124392322 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
124392322
NCBI-ProteinID:
XP_046715164
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Position
10:10853854..11102737
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AA seq
519 aa
AA seq
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MESPPDPTSEPGKSASEAASAVRESPLNLDALRKAEHQAPVRRHSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREQQQQPGEAEPLTP
TYGLSANGLTELHDELTGYMDGHTTEGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTPASGFFPYCSFSNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVFFDGKYAGPDVFKSLGCDDLISSIFEFGKNLCSMHLSEDELALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRTHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcctcctgatccgacgagcgagccgggtaagagcgcctccgaggcggcgagc
gcggtcagggagagcccgctgaacctggacgctctgcggaaagccgagcaccaagcgccg
gtgcgcagacacagctgttccagcaccaacagaggtatttcagtaacaaagaagacgcat
acttctcaaattgaaattattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgagggctgtaagggtttcttcaggaggagtcagcagagcaat
gcggcatattcgtgcccacgtcaaaagaactgcctgatcgaccgtaccagccgaaaccgc
tgccagcactgcaggctgcagaagtgtctggccgttggcatgtcacgggacgctgtgaag
ttcgggcgcatgtcaaagaagcagcgggacagcctgtatgctgaggtgcagaagcaccgt
ctccagcagcaacagagagagcagcagcagcagcccggcgaagccgagccacttacaccc
acctacgggctttcagcaaacggcctcaccgagctgcatgacgagctgaccggctacatg
gacggccacacgaccgaaggcaccaagcctgactcgggcgtcagcagcttctacctggac
atccagccctcgcccgatcagtccggcctggacattaacggcatcaagccagagcccata
tgtgacttcacgccagcctcaggcttcttcccatactgctcctttagcaacggcgagacc
tcccccactgtctccatggccgagctagagcatctggcccagaatatctccaagtcccac
atggagacatgtcagtatctgagagaagagctacagcagatgacctggcaggccttcctg
caggaggagatggaaagctaccagaacaagcccagagaagtcatgtggcagttgtgtgcc
attaaaatcacagaggccatccagtacgtggtggagtttgccaagcgtatcgatggcttt
atggagctctgtcagaatgatcagattgtgctgctcaaagcaggttctttggaggtggtg
tttgtcagaatgtgtcgtgcctttgaccctcaaaacaacacagtcttttttgacggaaaa
tatgccggccctgatgtgtttaaatcattaggttgtgatgacttgatcagctccatcttt
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagctcgccctgttctca
gcgtttgtgttgatgtctgcagaccgttcatggctccaagagaaagtgaaggtggagaag
ctacagcagaagatccagctggcccttcagcacgtcctgcagaagaatcacagagaggat
ggcatactaacaaagttaatatgcaaagtgtcgaccctgcgggcgctgtgcagcaggcat
acagagaagctgaccgctttcaaagcaatatacccggacattgtacgtacccacttcccg
cccttgtacaaggagctcttcggatcagactttgagcagtccatgcctgtggacgggtag
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