Silurus meridionalis (southern catfish): 124392384
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Entry
124392384 CDS
T08004
Symbol
rag1
Name
(RefSeq) LOW QUALITY PROTEIN: V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
124392384 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124392384 (rag1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124392384 (rag1)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124392384 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
zf-RING_10
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
zf-RING_2
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
124392384
NCBI-ProteinID:
XP_046715313
LinkDB
All DBs
Position
10:complement(13510889..13516477)
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AA seq
1065 aa
AA seq
DB search
MDTMETELYVPPDSPRASMPDELCHPYSNFSNWKFKLFRVRSLEKAPLPNEPPLEKEAEL
KVSEQADGLTVPSSIMKLCLGGKNKENVEGAGRQVDLKLQEIDTHMDHLRALCRLCGILL
RKSKGPEHEVQGDLDDHNKYALRRMGCKASKWPDVILKVFKVDVSGDMESIHPPMFCHRC
WNVAMRGGGICSFSRIRVPIWKPHNSQCPHCYPKRHILQRRGRKRXKPLQSIPKRTKKDT
STGGNRVWRQTTDNPPSMCLRAWVKPAAQRSLWVKNITHCQKDHLTSNLLPGEFPKDFVN
ALVCQVCDHLLSDPVQSPCQHLFCRTCIQKYSHILGPQCPACGLQFKPCDLNSPAEAFLS
ILHSLPLLCPREGCGELVRLDSFADHCLSHCFEKDGRKEENIPEQNMDGYLPVNKGGRPR
QHLLSLTRRAQKHRLRELKNQVKMFADKEEGGDVKSVCLTLFLLALRAGNEHKQADELEA
MMQGRGLGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHALRNAEKELLPG
FHQFEWQPALKNVSNSCNIGIIDGLSGWTASVEDVPADTISRRFRYDVALVSALKDLEED
IMEGLRERGLDDSTCTSGFTVVIKESCDGMGDVSEKHGGGPAIPEKAVRFSITVMSITIQ
PEGEEEAVTIFQEQKPNSELSCRPLCLMFVDESDHEMLTAILGPVVAERKAMKESRLILT
VGGLQRSFRFYFRSTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSH
DENLERYEIWRTNPFSESAEELRDRVKGVSAKPFIETQPTLDALHCDIGNATEFYKIFQD
EIAEVYLKNNPSREERRRWRSALDKQLRKKLKLKPVMRMNGNYARRLMTRESVEVVCELV
PSEERREALKELMELYLQMKPVWRSTCPARDCPDQLCRYSFNSQRFAELLSTTFKYRYDG
KITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKSFELEDILKH
HWLYTSKYLQKFMEAHKNSVKALQATINPEECPDDTDLSLDITDF
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggataccatggagacagagctgtatgttccaccagattcgccaagagcctccatgcca
gatgagttgtgtcatccttattccaacttctccaactggaagtttaagctctttcgagtc
cgttctttggagaaggcccctctgcctaatgaacctcctctggagaaggaggctgagcta
aaggttagtgaacaggcggatggcctgactgttcctagcagcattatgaagctctgtctt
gggggcaaaaataaggagaatgtggagggtgctggcagacaagtggatctcaagcttcag
gagattgacacgcatatggatcatctcagggccttatgccgcttatgtggcatacttctg
agaaaatctaaaggcccagagcatgaagtccagggagacctggatgatcacaataaatat
gctttgcggaggatgggttgcaaagcttccaaatggcctgatgtcattctaaaggtattt
aaggtagatgtaagtggagacatggaatctatccacccgccaatgttctgccatcgttgc
tggaatgtagctatgagaggagggggaatatgcagcttctccaggatcagggtccctata
tggaagccccacaactcacagtgccctcactgctaccccaagaggcacatacttcagcga
agaggaaggaagaganagaaaccactacagagcattcccaaaagaacaaagaaagatacc
tctacagggggcaatagagtgtggaggcagaccacagacaacccaccatcaatgtgcttg
agagcatgggtaaagccagctgctcagaggagcctttgggtaaagaatataactcactgc
cagaaagaccacctaacgtccaacttacttccaggtgaattcccaaaagactttgtgaat
gctcttgtgtgccaagtgtgtgatcacctcttgtctgacccggtccagtccccatgtcag
cacctcttctgccgcacctgcatccaaaagtacagtcacatcttaggtccccagtgtcca
gcctgtggcctccaatttaaaccatgtgacctaaatagtcctgctgaagcttttctgtct
attctccactctcttcctctgctctgcccaagagaaggttgtggcgagttggtcagatta
gactcctttgcagaccactgtttaagtcactgttttgagaaagatggcaggaaggaagag
aatattcctgagcagaacatggatggctacttacctgtcaacaaaggtggtcgtcctcgc
cagcacctgctctcactcacacgaagggcgcagaagcacaggctgagagagctgaagaat
caggtgaagatgtttgctgataaggaggagggtggagatgtgaagtctgtgtgtttgaca
ctgttcctgctggcactgagggcaggaaatgaacacaaacaggctgatgagctggaagcc
atgatgcaaggcaggggtcttggcttgcacccagctgtgtgtttggcaatacgagtcaat
acctttctcagctgtagtcagtaccacaagatgtaccgcactgtcaaagctactagtgga
cggcagatcttccagcctttgcatgctctccgtaatgctgaaaaggagcttcttcctggc
tttcatcaatttgagtggcaaccagctctgaaaaacgtttccaactcttgtaatattggg
atcattgatgggctttctggatggactgcctctgtagaggatgttcccgcagacacaatt
tctagaagattccgctatgatgtcgcattagtatcagctttaaaagacttagaagaagac
attatggagggacttagagaaagaggattggatgacagcacctgcacctcaggttttact
gtagtgattaaggagtcatgtgatggcatgggagatgtcagtgagaagcatggaggaggg
ccagcaatcccagaaaaggcagtgagattttctattacagtgatgtctatcactattcaa
ccggaaggtgaagaagaagcagtcactattttccaggagcaaaagcctaactcagagctt
tcctgcagaccgctgtgcctcatgtttgtggatgaatctgatcatgagatgctgacagcc
atcttgggtcctgtggtggcagagcgtaaagctatgaaggagagtcgcctcattctcact
gtaggtgggctccaacgttccttccgcttttattttaggagcacaggctatgatgaaaag
atggtaagagaaatggagggtttggaggcttcgggctcgacttacatctgcaccctgtgt
gactccacacgagctgaagcctctcagaacatggtgcttcactccatcactagaagccat
gatgaaaaccttgaacgttatgagatatggagaactaatcctttttctgagtctgcagag
gagctgcgggatcgagtaaaaggggtctcagccaaacctttcattgaaacacaacccacg
ttagatgccttgcactgtgacataggtaatgccacagaattctacaagattttccaggat
gagattgctgaagtgtacttaaaaaacaacccatctcgagaagagcggcgacgctggaga
tcggcccttgacaagcagctgaggaagaaactgaagttgaaaccagtgatgagaatgaat
gggaactatgcccggcgacttatgacccgtgaatctgtggaagtggtgtgtgagttggtt
ccttcagaagagcgccgtgaggcgctgaaagaactaatggagctatacctccagatgaaa
cctgtttggcgttctacttgtccagctagagattgtcccgatcagctttgccgctacagc
ttcaactcccaacgttttgcagagctcctttccacaacatttaaatatcgctatgatggc
aaaattactaactacctccataagactctagcccatgtacctgaaattgttgagagagat
ggctcaattggtgcatgggccagcgaagggaatgaatcagggaacaaacttttcagacgc
ttccgtaaaatgaatgccaggcaatccaagtcatttgagttagaagacatattaaaacac
cactggttgtacacttcgaagtatctgcagaagttcatggaggctcacaagaactcagta
aaagcactgcaagccaccataaacccagaggaatgcccagatgacactgatttatctctt
gacataacagacttttaa
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