Silurus meridionalis (southern catfish): 124392402
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Entry
124392402 CDS
T08004
Symbol
gabra6a
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-6a
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04080
Neuroactive ligand-receptor interaction
smeo04082
Neuroactive ligand signaling
smeo04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124392402 (gabra6a)
04082 Neuroactive ligand signaling
124392402 (gabra6a)
04519 Cadherin signaling
124392402 (gabra6a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124392402 (gabra6a)
Ion channels [BR:
smeo04040
]
Ligand-gated channels
GABA-A
124392402 (gabra6a)
SSDB
Ortholog
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GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
124392402
NCBI-ProteinID:
XP_046715357
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All DBs
Position
10:complement(20423260..20446029)
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AA seq
437 aa
AA seq
DB search
MDKLFGMYLLLSIGKVIGNQHEEISPENITWILDQLLEGYDNRLRPGSGGLVTEVKTDIF
VTSFGPVSDVEMEFTMDMFFRQMWVDERLAFNGPFEILRLNNRMVDKIWTPDTFFHNSKK
SMAHNMTTPNKLFRIMQNGTVLYTMRLTVNAECPMMLMDFPMDGHICPLSFGSYAYTSSE
IVYTWRKGLNKSVVVPPESSNLLQYDLISQTLSSKILKSNTGQYSVKMVHFFLQRKLGYH
LIQTYIPLIMVVVLSQVSFWINKESVPARTVAGVTTVLTMTTLSISARSSLPKVAYATAM
DWFIAVCFAFVASALVEFAAVNYFATLEADRMRRRLSRASVLEFIAEGSDDEDESTISDT
STGQRRRMNSASEAPKMRLPIFLQQGSAVPPNIALAGPSVIDQYARVLFPLAFALFNIMY
WYIYLSKEAVEKLREMD
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggataaattattcggaatgtatttattactcagtattgggaaagtaataggaaaccaa
catgaggaaataagtcctgaaaacatcacctggatcctggaccagcttcttgaaggctac
gacaaccgactgaggcctggatcaggaggtttagtcactgaagtcaagacagatatattt
gtcaccagttttggacccgtatcagatgtcgaaatggagttcaccatggacatgtttttc
cgacaaatgtgggtggacgagaggctggcgtttaacggtcccttcgagatcctgcgctta
aacaaccgcatggtggacaagatttggactccagacacttttttccacaactcgaagaaa
tccatggctcacaacatgacgacgcctaacaagctgtttcgcatcatgcagaacggcacc
gtcctctacaccatgaggctgactgtaaatgcagagtgtcccatgatgctgatggacttt
cccatggatggccatatttgtcctctcagcttcggaagctatgcctacaccagtagtgag
attgtttacacgtggaggaaaggcctgaacaagtctgtggtcgtccctccggagtcttcc
aacttactgcagtacgatctcatctcacagacgctttccagcaaaatactgaagagcaac
acaggccaatattctgtcaagatggttcatttcttcctccaaaggaaacttggttatcat
ctgatccaaacatacatccctctcatcatggtggttgtcctgtcccaagtgtcgttctgg
atcaacaaggagtccgtgcctgctcgcactgtggctggagtcaccaccgtcctcaccatg
accacgctaagcatcagcgcacgatcatctctacccaaagtggcctacgctacagccatg
gactggtttatcgctgtctgcttcgccttcgttgcctcggccctggtggagtttgccgcc
gtcaactactttgccacgctggaggccgacaggatgagacgtcgactctccagagcgtcc
gtgctggagttcatcgctgaagggagtgacgatgaagacgaatcgacgatatctgacaca
agcacaggacaaaggagaaggatgaactccgcttcggaagcccccaaaatgcgcctgccc
atcttccttcagcagggttcagccgtcccacccaacattgcgctggctggccccagtgtc
attgaccagtacgctcgtgtgctgttcccactcgcattcgcgctctttaacatcatgtac
tggtacatttacctcagcaaggaggccgtggagaaattaagggagatggactga
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