Silurus meridionalis (southern catfish): 124392530
Help
Entry
124392530 CDS
T08004
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124392530 (upf2)
03015 mRNA surveillance pathway
124392530 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124392530 (upf2)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124392530 (upf2)
mRNA cycle factors
P-body specific factors
124392530 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124392530
NCBI-ProteinID:
XP_046715610
LinkDB
All DBs
Position
10:complement(420867..450406)
Genome browser
AA seq
1276 aa
AA seq
DB search
MPAERKKSTTADEKETLSNKEKEKERDGERRAAFSRDKARDENKMSGKKEGGKSADEKKR
RIEEEKRRKEEKERKKREEEKQKAEEEQKRKEEEERKQQEEQEKKLLEEEAKRQKEEEAA
QLKEKEEAQQLHQEAWERHQTRKELRVKNQHAQEGRPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRSSLSHDFDSLNLSKYIGEAVSSLVEAKLKISDVGCGVHLCSLFHQRYVDFAPQ
LLAAWKRHFEARKEEKTPNVSKLRTDLRFIAELTTVGLFTDKEGLSLIYEQLKNIIAADR
ETHTHVSVVISFCKHCGDDIAGLVPRRVKSAADKFGLNFPPSEIINSEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATCYQKLLANTQSLADL
LDENMPELPQDKTVQEEHGPGIDIFTPGKPGDYELDGGIWEDEDARNFYENLVDLKAFVP
AILFKDNEKVGQNKDKEDGKEAKEGREGKDVSCTEELELELEALDITDDPLDIEGPDEAE
NEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKS
NRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQIN
IETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPE
SHLRTSVLLEQMMRKKQAQHLDARYITMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLL
YKDLSKVTTEKVLRQMRKLPWHEADLKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQE
DVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISF
GVNQDGSSSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSL
EVWTKDHQFPIDIDYMISDMLDLLRPKMHLCCSLEEACHQVTELEREVLIKLGYATEKDG
SCSGSIGEGEALDEEDEEDEDERGAETEEQSGNESEMNEPEEEEGSENEEEERDEEEENT
DYLTDSNKENETDEENNEVMIRGGGLKHVACAEDDDFIQALDKMMLENLQQRSGEAVKVH
QLDVAIPLQLKSQLKKGSAPACTADTDADIDTMQFVMLTRKGNKQQFKILNVPLSSHLAA
NHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPK
GAPNADLIFKTGGRRR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgccggccgaacgcaagaaatccacaaccgcagacgagaaggagactttgagcaacaag
gagaaggagaaggagcgagacggcgagcgacgagcggcgttttcccgagacaaggccagg
gacgagaacaaaatgagcggaaagaaggagggaggcaagtctgcagacgagaagaagcga
aggatcgaagaggagaagaggaggaaagaagagaaggagcgcaagaagcgcgaggaggag
aagcagaaggccgaggaggagcagaagaggaaagaagaagaagagcgcaagcagcaggaa
gaacaggagaagaagctgctggaggaggaagctaaacgacagaaagaggaggaagctgca
cagctgaaggagaaggaagaagctcagcagctgcaccaggaggcttgggagagacaccaa
accaggaaggagctgcgtgtgaagaatcagcatgctcaggaaggtcgccctgaagaagcc
ttcttcagccgcctggattccagcctgaagaagaacacggcgtttgtgaagaagctccgc
acgctcacggagcagcagcgctcctcactttcgcacgacttcgactcgctcaatctcagc
aagtacatcggggaggcggtcagctctctggtggaagccaagctgaagatctcagacgtg
ggctgtggtgtgcacctgtgctctctgttccaccaacgctacgtggacttcgcgccgcag
ctcctcgctgcctggaagaggcactttgaggcgcgcaaggaggagaaaaccccgaatgtg
agcaagctgcgtaccgacctgcgcttcatcgccgaactcaccaccgtgggcctgttcacc
gataaggaagggctctctctgatctacgagcagctgaagaacatcatcgcggccgaccgt
gaaacccacactcacgtctccgtggtgatcagcttttgcaagcactgcggagacgacatc
gccggcttggttcctcgccgcgtcaaaagcgcggccgacaagtttggcctgaactttcct
cccagcgagatcatcaactccgagaagcagcagcccttccagaacctgcttcgggagtat
ttcacatctctcaccaaacacctgaagaaagaccacagagagctgcagaacatcgagcga
cagaatcggcgtatccttcactcgaaaggagagctgagcgaggatagacacaagcagtac
gaggagtttgctacatgctaccagaaacttctggccaacactcagtctctggctgatctc
ctggatgagaacatgcctgagctccctcaggataaaactgtccaagaagaacatggccca
ggcatcgacatcttcactcccgggaagcccggagactacgagctggatggagggatctgg
gaggacgaggacgcgcggaacttctacgagaacctggtggacctgaaggcgtttgttcct
gccatcctgttcaaggacaacgagaaggtcggccagaacaaagacaaggaggacggcaaa
gaagctaaagaagggcgtgaggggaaagacgtgagctgcacagaggaactggagctggag
ctcgaagctctggatatcactgacgaccctctggacatagaaggtcccgatgaggccgag
aatgaagaactggccaagaaactcctcgacgagcaagaacaagaggatgaagaagccagc
actggatctcatctcaaactcatcgtggacgctttcatccagcagcttcccaactgtgtc
aaccgagacctgatcgacaaggctgcaatggacttctgcatgaacatgaacaccaagtcg
aatcggaggaagcttgtgcgggcgctcttcactgttcccaggcagagactggatctgctg
ccgttctactcacgcttggtggccactctgcacccctgcatgtctgatgttgctgaggat
ctgtgctccatgctcaaaggagactttcgattccatgtcagaaagaaggaccaaattaac
atcgagaccaagaataagacggtgaggtttatcggagagctggccaagttcaaaatgttc
tctaaaacagacacgctgcactgcctgaagatgctgctgtctgatttctctcatcaccac
atcgagatggcctgcactctgctggagacgtgtggacgcttcctcttcaggtccccagag
tctcacttgcgcaccagtgtcctactggagcaaatgatgcgtaagaagcaggctcagcac
ctggatgctcgctacatcaccatggtggagaacgcctactactactgcaaccctccaccc
atggagaaaaccgtccgcaagaagagacctcccctacaggagtacatccgcaaactgctc
tacaaagacctgtccaaggtcaccactgagaaggttttaaggcaaatgcgtaaattgccc
tggcatgaggcagatttgaagagctacctgatctgctgcatggtgaacatctggaatgtg
aagtacaacagcatccactgtgtggcgaacctgctggctggtctggtggcttatcaggag
gacgtcggtatacacgtggtggatggagtgctggaggacatccgcctgggcatggaggta
aaccagccgaagttcaaccagcggcgcatcagcagtgcgaagttcttgggcgagttgtat
aactaccgcatggtggagtcggccgtgatcttccgcacgcttttctccttcatctcgttc
ggcgtgaatcaggacggctcttccagccctctggatccccccgaacacctgttccgcatc
cgcctggtgtgcacgctgctcgacacgtgcggccagtacttcgaccgcggatccagcaag
aagaagctcgactgcttcctaatctacttccagcggtatatctggtggaagaagagtttg
gaggtgtggactaaagatcaccagtttcccatcgatatcgactacatgatcagtgacatg
ctggatttactgcgacccaaaatgcacctgtgctgctctctggaggaggcctgccatcag
gtcactgagctcgagagagaagtcctcatcaaactgggatatgctacagagaaggatggg
agctgttccggcagcattggagaaggagaggctctggacgaggaggatgaggaagatgag
gacgagcgtggagccgagacagaagagcagtcaggaaacgagagtgagatgaacgagcct
gaggaggaggaaggctctgagaacgaggaagaagaacgtgacgaagaggaagagaacact
gactacttgaccgattccaacaaagagaacgagacggacgaggaaaacaatgaggtgatg
attcgaggtggaggtctgaaacacgtggcctgtgctgaggatgatgacttcattcaggct
ctggacaagatgatgctggaaaacttgcagcagcgcagtggcgaggcagtaaaagtgcac
cagcttgacgtcgccatcccactgcagctgaagagccagctgaagaaaggctccgccccc
gcgtgcactgcagacacagacgcagacatcgataccatgcagttcgtcatgctgaccagg
aaaggcaacaaacagcagtttaagatcctgaacgtccctctgtcttcacatctggctgca
aatcacttcaaccagcagcaggcggagcaggaggagcgcatgcgcatgaagaaactcacc
ctggacatcaacgagcgtcaggagcaggaggactatcaggagatgatgcagtcgctggcg
cagaggccggctcctgctaacaccaaccgcgagcgcaggcctcgctaccagcacccgaaa
ggagccccgaacgcagacctgatcttcaagactggaggaaggagacgctga
DBGET
integrated database retrieval system
