Silurus meridionalis (southern catfish): 124392588
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Entry
124392588 CDS
T08004
Symbol
cspg4
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124392588 (cspg4)
04091 Lectins [BR:
smeo04091
]
124392588 (cspg4)
Proteoglycans [BR:
smeo00535
]
Cell surface proteoglycans
Others
124392588 (cspg4)
Lectins [BR:
smeo04091
]
C-Type lectins
Others
124392588 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Big_9
DAG1
Orf78
Motif
Other DBs
NCBI-GeneID:
124392588
NCBI-ProteinID:
XP_046715687
LinkDB
All DBs
Position
10:1095388..1119879
Genome browser
AA seq
2306 aa
AA seq
DB search
MAMFVRDAIQIHYMKYCDSPISCTLTNYYFSYFGDSYCRIDVVQDLLSFHLSXQFKTSKR
SGLLLLAAGNSDYLSLELINGRLQARMDMGSGEVVLSSSPGVQLNNLLDHHVSLTLQESK
LIMSVDDIFTTSVGVQGEEEYLSIDMGVFLGGVKDLDVEYISTAVPFFRGCMSSMKFESH
QFNILSSAATVCHDTVAICSGEFEATDGEAISFTSADSFVSFPTWTRPNTGSRNMEILMK
TTIEDALLLFHPGQESDFIALGMAGGYLKGVAQLGSGIVILNNLKVKLDDDQWHRIRMQV
DPNTFEITVDSESVSKLLLGSEKLDLVGNLYLGGIQGKMKDVFRDSYLAFMEDEITSESF
IGCLGDVKINQKDRTLQDALITKDIHTKCEGXEYDYSTYYDETAATTAPTQIITVWYMPD
ERHCFPSEGMPEIFQNVSKLLSITPLLVPEGGEAFIELSNLNPTFNLNAAGIRQSQIIFT
LQSDPSYGLLDMNINTRRTKKFTLLDVANKKIKYLHDGNEKYGDQIQLEVVAHGSNLPEC
LKNPHQYRLPVEILPVNDIPQLSVEDIAITANGRTLLSPNLVKIADSDKRCDNLIVTVTS
GPSPYGYLENSEQPHRRLGNFTCRQLKDGLIYYVHQGGSEDELTLKVLEVSVTIRLIVTE
PQISLVTNTGLRLVQGANSSIGIQNLAVSVTPKNDDIMFNVTQPLRFGELQIIGHDGVPK
RVSQFYQTDLEQNRLMYTTKTLADMEDKKTEYIHFNVQLGQFTLPDNIFIIEIVPAELIM
AKIIPLNILSREPKVIKKFELEAIVKGKNIDPAFIRYIVLRRPTMGALMLHDRELSDRDS
FTQQDIEAGYISYRPTIQRALNADDYFQFKIVADDQYSQLYTYPISVKADSSFPVLTNER
LLVLKGNESTLSKEHIWVQTQESTNFVYRIIEDPMHGRLIRDSPPGVPRFEGAVRVFSNE
DILLKRLIYKHDGSEFSQDQFTFQVRDVSAGSTNENGIEGTFHIAIQSRNDYVPQRVINK
PFHVTRSGQRLLTTDDILFRDDDSSFNNTQLVYVREGILSGSIVSSANPLQPLYRFTQAD
LKDGKILFVHHGADRDLFQLHVSDGLHRTTALLEVQAGDPYLDIVNNTMIIMDYASTKTL
DTSVLGTESNMDIRSASEIIYDVNTPPSDGKIIVSGIEATRFTQEDLRKGVVSYENSDQS
LRSTDSFTFTVHAKNMTEEGTFRIKIVKQGFLSKPQVTSNKVIIAYEAEHTVIDQDHLRV
EQANISPTELVFTIKELPRFGHVVSVINDTESTVSPVMDYIQSFTQEDINMGTILYVSAS
EHSQDMFTLDVSNGFTTIEDLEVQVDIMPRFIPVQVANLTVREGDNVILTEDILNITHPF
YRSVHIEFIMEKEPQHGEIKYLDREDDALVTFTWDDVQQGSVYYFHDGTESTEDNFTFSA
TAYELNRRSHPITVGVTVIPINDEPPRLRHNTGLELLISEEMEITSKSLSAEDLDTPPDK
LVYNIEGTKNGIVALKELPDLVIERFTQAQINNGEVIFIHKGSESGGFSFTVTDGDHTSP
LHRFVVAVRQLTISMEVNGELLVFPGSRQAINSDILRAVTSEDGDEISYSITKPPRLGRL
IKPNQSGQFEEIKQFTQTELDAGAVYYEHQMPSESFWVVKDAVELELSSPPAAKLKHTLP
VTVSYYATNQNVSSQLWKNKGMSVVQGQSKVFDITILDASNLLGSVPQEKREGQDIVFEV
QQFPKHGQLTLGGDVFPRDSPYFLQDDIIKGKLEYRHDDSGALADRFSFRVRLNPRGHPP
QAVPGAIVLEEVFSLSIRRRDFSPPELVTLDLLLEALQGSTTVLSKQHLNTIDQDSTPDE
VRFTIVKGPTNGHIIYKDTGERVLEFTQEEVNLGQVAFVSDGSFSNSFMEFTVSDGKHQS
DPHTMNIGILAKKLLLNKVQEIQFKQGDDETPIMETMLKASTGGPIEEEVIYKITNEPKY
AVVMVDRQATSAFTQKQIREGRVSVRFIKSTSSNDSFSFVARSRAANVSSSLNITVKPLV
KVAKVPLLPRGTRVLVDRKLLDATPLANKTKTSPTFSVTRQPKGARFVKRGGPSDGQPVD
SFTQRDLDEGRVALEVLNSTGDPKEKGQDQDEARFLLKAHGVPPAECALSFQTVPYDPAG
IYGATVLEVPPSVPNSDTSKGDQPGLGVDGKWHGAAPTTSSPSSNRSPVSRRNSIWAILI
PILVILLLLIVAGVLAYYLVRRNKTGKHNVQNAATKPKNGEVAQETFRKTDPANSIPMSN
MESKDPELLQHCRTTNPALKKNQYWV
NT seq
6921 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttcgtaagagatgctattcagattcactacatgaaatactgtgattcacct
ataagctgtactttgaccaattattacttttcatacttcggggatagctactgccggata
gatgtggtgcaggatctgttaagtttccatctgtcanctcagtttaagacaagcaaacgc
agcgggctgctcctcctagctgctggaaacagtgactacttgtctctggagctcatcaat
ggcaggttacaggcaagaatggatatgggatctggggaagtggtgctgagctcctcccct
ggtgtgcaactcaacaatcttttagatcaccatgtttctctgacgctacaagaaagcaaa
ctcataatgagcgtggacgacatatttacgacgtccgttggcgtacagggagaggaggag
tatctcagtattgatatgggtgtattccttggcggtgtaaaagacttggatgttgaatac
atcagcaccgctgtccccttcttccgtggctgtatgagcagcatgaaatttgagtctcat
cagtttaatattttgtcgtcagctgcaactgtctgccatgacactgtagccatctgtagc
ggtgagttcgaagcaacagatggagaggccatcagctttacaagtgcagactcatttgta
tccttcccaacctggaccagacccaacactggctcccgcaatatggaaatactgatgaaa
accaccattgaagatgctctgcttctctttcacccaggtcaggagtctgattttattgcc
ttggggatggcaggagggtacctgaaaggtgtggcacaactgggcagtggcatagtgatt
cttaacaacttaaaagtaaagctggatgatgaccagtggcacaggattcgaatgcaggtt
gatcccaacacttttgagataacagtggatagtgagtctgtctcaaagcttctattggga
tcagaaaaactggaccttgtgggaaatctgtacttaggaggcattcaagggaaaatgaag
gacgtattccgagatagctacctggcatttatggaagatgagataacatctgagtcattc
attggatgcttaggcgacgtcaagataaaccagaaggacagaaccctacaagatgccctt
ataactaaagatatccatactaaatgtgaagggnaagagtatgactattccacctattat
gatgaaacagctgcaactacagccccaacacagataataacagtttggtacatgccagat
gaaagacactgttttccatctgagggcatgccagagatctttcaaaatgtctctaaactc
ttaagcatcacccctttgctggttccagagggtggagaagcatttattgaactaagcaac
ctaaacccaaccttcaatctaaatgctgcaggaatccggcaatctcaaatcattttcacc
cttcagagcgatccttcgtatggccttctagacatgaacatcaacacaaggcgcactaag
aagttcactctactagatgtggcgaataagaagattaagtatcttcatgacggcaatgag
aagtacggcgatcaaatccaactggaagtggtggcgcacggttccaacctcccagagtgt
ttgaaaaatccccaccaataccggctcccagtggaaattctgcctgtcaacgacataccc
cagcttagtgttgaagacattgccatcacagcaaatggacgcactctcttaagccccaac
cttgtcaagatagcggattctgataagcggtgtgacaatttgattgttacggttacctca
ggtccaagcccttatggttacttagagaattcagagcaacctcataggaggctaggaaat
ttcacctgcagacagctcaaggatggactcatttactatgtccaccaaggaggctcagag
gatgagctcactcttaaagttttagaagtttcggtcaccattagactcatagtaactgag
ccacagattagtctggtaacaaacaccggactgcgcctcgttcagggtgccaactctagc
atagggatacagaacctggctgtatctgtcactcccaaaaatgacgatatcatgttcaat
gttacgcagcctttaagattcggagagctacaaattattggacacgatggtgtgccgaag
agagtgtcacagttctatcaaactgacctggagcagaatagactcatgtacactacgaag
acgttagccgatatggaggacaaaaaaactgagtatattcattttaatgtgcagcttgga
cagtttacacttccagacaatatattcatcattgagatcgtacctgctgagctaattatg
gcaaaaatcatccctcttaatattttatcaagggagccgaaagttatcaaaaaattcgag
ttagaagcgatcgttaaaggtaagaatatcgacccggcttttatcagatacatcgttctg
aggcgtccgacaatgggtgcattgatgctgcatgatagagagctgtcagatagagatagc
ttcacccaacaggatattgaagctggatatatcagttacagacccacaatccaaagggct
ttaaatgctgatgactattttcagttcaagattgttgcagatgatcaatactctcaatta
tacacttacccaatcagtgtaaaagctgactccagtttcccggtattaaccaatgagaga
cttctggtactgaaagggaatgaaagtacccttagtaaagaacacatttgggtgcagact
caagagtccacaaactttgtgtacaggatcattgaagaccctatgcatggacgtctcatt
cgggactcccctcccggtgtgccaaggttcgagggtgcagtccgagtttttagtaatgaa
gatatcctcttaaaaaggctcatctataaacacgatggctcagagttcagccaagatcaa
tttacctttcaggtccgtgacgtaagtgcaggtagcactaatgaaaatgggatcgaagga
acatttcacatagcaattcaatccagaaatgattatgtacctcaacgggtcattaataaa
cccttccacgtaacaagaagtggccagcgtctactgaccactgatgacattctattcagg
gatgatgactccagctttaataacacccaactggtttatgttcgagaaggcattctctct
ggtagcatagtgtcgtctgcaaaccctttacaacccctctaccgtttcacacaggcagac
cttaaagatgggaaaattctgtttgtccatcatggtgctgaccgggatctgtttcagctt
cacgtgtctgatggattgcatagaaccacagcacttctagaggtgcaggccggtgaccca
tatctagacatcgtcaataacaccatgattatcatggactacgccagtaccaagactctg
gacacgagcgttctgggcacagagtctaacatggacattaggagtgcttcagaaattata
tatgacgtaaacacccctccaagcgatggcaagattatagtcagtgggattgaggcgact
cggttcactcaggaagacctcaggaaaggtgtggtgtcctatgaaaacagtgatcagagt
ctccggtccacggattcattcaccttcaccgtgcatgcgaaaaacatgactgaggaaggc
actttcagaattaagatcgtcaagcaaggatttttgtctaaacctcaagtcacgtctaat
aaagtgatcattgcatatgaggctgagcatacagtcatcgaccaggatcatcttagggtg
gagcaggccaacatctcgcctaccgagttagtgtttactattaaagaacttccacgcttt
ggccatgtggtcagtgtgattaatgatactgagagcacagtgtctcctgtgatggactat
attcaatcttttacacaagaggacataaacatggggacgatcttatatgtttcagcctca
gaacacagtcaagacatgttcactctagatgtcagtaacggtttcaccacaattgaggac
ctagaggtgcaggtagacatcatgccccggtttatacctgtccaagtggccaacctcact
gttagggaaggagacaatgtgattcttacggaagacattctgaacatcacacatcctttc
taccggtccgttcatatcgaattcattatggagaaggagcctcaacatggagagatcaaa
tatctggacagggaggatgatgcgcttgtgactttcacctgggatgatgtgcagcaggga
agcgtctactacttccacgacggcacagagtccacggaggacaatttcactttctcagcc
accgcttacgagttaaatcgccgcagccacccgatcaccgtgggcgtcaccgtgatcccg
atcaacgacgagccaccacggctgaggcacaacacgggcctggagcttcttatcagcgaa
gaaatggaaatcacaagcaaatctttgagcgcggaagatctggacacccctccagacaag
ctggtgtacaacatcgagggaaccaagaatggaatcgtcgctctgaaagagttgcccgac
ctcgttattgaaagattcacccaggctcagatcaacaacggcgaagtcattttcatccac
aaaggatcggaatctggtggattcagtttcacggtgacagatggagaccacacatctccc
ctccaccgcttcgtcgttgctgtccggcagctgacgatctccatggaagtaaacggcgag
ctactggtctttcctggatccagacaagccatcaacagcgatatcctgcgagcagtgacc
agtgaggatggagatgagatcagctattctatcacgaaacctccacgtctagggcgactc
attaagcccaaccagagtggacaatttgaggaaatcaagcaatttacacaaaccgagctg
gatgctggtgcagtgtattatgaacaccaaatgccatcagagtccttctgggtggtaaaa
gacgctgtagaacttgagctctcatcacccccagcggcaaagctcaaacacactcttcct
gtgacagtgtcgtactacgccaccaatcaaaatgtgtcctcgcagctgtggaagaacaaa
ggtatgtcagtggtacagggacagtccaaggtgttcgacatcaccattcttgatgcgtct
aacctgctaggcagtgtcccacaagagaaacgggaaggccaggacatcgtttttgaggtt
cagcagttccctaaacatggccaactcactctcggaggtgacgtttttccccgggattca
ccctatttcctgcaagatgacatcattaaaggaaagctggagtaccgccatgatgactcg
ggagccctggcggacagattttctttccgtgtgcggctgaacccccgtggtcaccctcct
caggctgttccaggagccatagtgctagaggaggttttttctctctcaatcagacgaaga
gacttcagccccccggagttagtcactttggacctgctgctggaggctctgcaaggatct
accactgtactctccaagcagcacctcaacactatagaccaagatagtacaccagatgag
gtcagattcaccatcgtgaagggtcctactaatgggcacattatctacaaggatactggg
gagagggtcttggagttcacccaagaggaggtgaatttgggtcaggtggcatttgtgagc
gatgggagcttctctaacagttttatggaattcactgtctctgatgggaaacatcagtca
gatccgcacacaatgaacatcggcatcctggccaagaaacttctgcttaataaggtgcag
gagatccaattcaagcagggagatgatgagactcctatcatggagacaatgttgaaagca
tccacaggaggaccaatagaggaagaagtcatctataaaattacaaatgagccaaagtat
gcagtagtgatggtggacaggcaagctacttctgcgtttactcaaaaacagattagagaa
gggagagtgagtgtccgcttcatcaagtccacatcttcaaatgacagtttttcctttgta
gcccgcagcagagcagctaacgtttcctccagccttaacatcacggtaaaacctttagta
aaagtagccaaggttcccttacttccacgtggcactagagttctggtggacagaaagctg
ttagatgccaccccgcttgccaacaagaccaaaacctcaccaaccttcagtgtgaccagg
cagccaaagggagcaaggtttgtaaaaagaggagggccttcagatggccagcctgtggat
tccttcacccagagagatctagatgaggggcgagtggctctagaagtcctaaactccact
ggggatccaaaggaaaaaggtcaagatcaagatgaggctcgcttcctccttaaggcacat
ggagttcccccagcagagtgcgctctttccttccagacagtaccttatgacccagcagga
atttatggtgctacagtacttgaggtgcctccttctgtgcccaactctgacacgagtaaa
ggagaccagcctggattgggggttgacgggaaatggcatggagcagctcccaccacatcc
tctccgagctccaatagatcccctgtttcaaggcggaactcgatatgggccatccttatt
cccatattagttatcctcctactactaattgtggctggagtgttagcatactacttggtc
cgtcgcaacaaaacaggaaagcacaacgtccagaatgctgccaccaagcccaaaaatgga
gaggtggctcaggaaacctttcgaaaaaccgacccagcaaatagcatccccatgtccaat
atggagtctaaagatcctgaattactgcagcactgtcggacaacaaacccagccctgaaa
aagaaccagtactgggtatga
DBGET
integrated database retrieval system
