Silurus meridionalis (southern catfish): 124392911
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Entry
124392911 CDS
T08004
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15
KO
K16499
protocadherin delta 2
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124392911 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Protocadherins
124392911 (si:ch73-233f7.1)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Nodulin_late
Motif
Other DBs
NCBI-GeneID:
124392911
NCBI-ProteinID:
XP_046716144
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Position
10:complement(16892084..16899878)
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AA seq
1002 aa
AA seq
DB search
MDQGLERRQWTSAWSAFRLLMCVCALDRVLGQIRYSVLEEREHGAFVGNIGEDLGLDVAR
LSARRFRIVSGARKQYLEVNLENGILFVNEKIDREDLCEQSPVCFLHLQVVIENPLELYR
VEVEILDVNDNAPSFPWSEFNLEITESAAPGSRFPLESAQDLDAGTNSLRSYLLSANQHF
VLDVQTRNDGSKFAELVLESPLDREKQKMHEMVLTAVDGGSPLRSGTAQIMVTVLDANDN
VPVFDRSVYRVSLVENAPRGTLVLKLNATDLDEGSNGEIVYSFSGHAPLKVRELFSVDSY
SGEIRVKGIVDYEKASVYELYVQAKDKGPSAVAVHCKVLVDILDVNDNAPEVILTSVSTP
VQEDAPPGTVIAVISVMDRDSGENGAVDCQIPSHVPFRLHSSFKNYYTLATSEFLDRESI
AEYNITLTARDLGTPLLSTGKTIHVIVSDVNDNPPHFLQPSYTVYVTENNAPGASICSVS
AVDPDSNQNAYLSYSILEGQIRGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQIRVQAR
DAGFPPLSGNVTVSVFVLDQNDNAPLVVSPLPRNGTAATETVPRSADAGYLVAKITALDA
DAGQNSRLSYQVLHATDPGLFSIALYTGEIRTIRRFVDKDATRHRLVILVKDNGQPSLSA
TVPLILTLVDGVPESLSELDDHALSRRAPSNLALYLIISLSVVSLIFLVAIIVLAALKCY
KDRDCPGGFSMSFIGASCCSLESEPVPESCKKSNLNLQISTGTKVPTNCVESSTGTTSQN
YCYKVCLTPESAKSDFMFMKSYSPNTPRNNAAKEAENLAWSSRGPSANNGATTPNELKQD
NTNWALNKNQTSTLKSYNSINMDGTIMRKVMHTDSENYVSPVAAGQYWTWGSRMRECKKS
SPATGVPERAWTPRYTPTKKTPQQQQPSGQSQGQPPPDYQHNVYIPGTTSALCTLRPTNR
SELDVHNTFSTFGKKRKFISPGSYDPRVEIGTEVINNDLYNE
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagggctcgagaggaggcagtggacatcagcgtggtcagctttccgtctgctt
atgtgcgtgtgcgcgctggaccgcgtgctcgggcagatccgctactcggtcctcgaggag
cgcgagcatggcgcattcgtcggaaacattggcgaggacttgggcttggatgtcgcgcgc
ttgtctgcacggcgattccgcatagtgtctggagcaagaaaacagtatttagaggtcaat
ttggaaaacgggattttgtttgtgaacgaaaagattgatcgagaggacttatgcgaacag
agtccggtttgtttcttgcatttacaggtggtcatcgaaaaccccctggagctgtaccgg
gttgaagtggaaatcttagacgtaaacgacaacgctccgagttttccgtggagcgagttc
aacctagaaataaccgagtctgccgcgccgggatcacggttcccgctcgagagcgcgcaa
gacctagacgctggaaccaactcgctccgctcgtacctgctaagcgcaaaccaacacttt
gtgttggacgtccagacgcgcaacgacgggagcaagttcgctgagctcgtgctggaatct
cctttagaccgcgagaagcagaaaatgcacgaaatggttctaaccgcggtggacggcgga
tctccgctgcgctcgggcactgcacaaatcatggttactgtactggatgcgaacgataac
gtccctgtattcgacagatcggtttaccgggtaagcctggtggagaacgcaccgagagga
acacttgtgctcaagctcaacgccacggatttggacgaaggctcgaacggcgagattgtc
tattcattcagtggccacgcgcccttgaaagtgcgcgagctgttcagcgttgattcttat
tcaggtgaaattcgagtaaaggggattgtggactatgaaaaagccagcgtgtacgagctt
tacgtgcaggcaaaagacaagggtccctccgccgtggccgtgcactgtaaagtgcttgtc
gatatattggacgttaatgacaatgcgccagaggtcatcctgacctctgtctccacacct
gttcaggaagacgcgcctccggggactgtgatagccgtgatcagtgtcatggatcgtgac
tctggggaaaacggagcggtagactgtcagattcccagccatgttccctttaggcttcat
tcgtcttttaaaaactattacacactcgcgactagtgaatttctggatagagagtcgata
gccgaatacaacatcactctgacggcgcgggatttaggtacgcctttgctctccaccggg
aaaaccattcacgttattgtgtctgacgttaatgacaatcctcctcacttcctccagccg
tcctacaccgtttatgtgaccgagaataacgcaccgggggcttccatttgctccgtaagc
gcggtcgatccggactctaaccagaacgcatatctatcctactctattcttgagggtcag
ataaggggcatgccggtgtccacgtacgtttctattaactcggacaacggcaacatttac
gctcttcgctccttcgactacgagcagctccgcaactttcagattcgagttcaggcgcgg
gacgccggtttcccgccactgagcggaaacgtgactgtcagcgtgtttgtattggaccag
aacgacaacgcgccgctagtcgtttccccgctgccgaggaacggcacggctgctactgag
actgttccgaggtcggcggacgcaggctacctcgtcgcaaaaatcacagcgctggacgcg
gacgcagggcagaactctcgcctctcgtatcaagtgctgcacgccacggacccgggacta
ttcagcatcgcgctatacactggtgaaattcggaccatccgacgcttcgtagacaaagac
gccaccagacacagactcgttatattggtcaaggacaatgggcaaccatctctttcggcc
accgtacccctcattctgacgctggtagatggcgtgccggagtcgctgtctgaactcgat
gaccacgctctcagccgccgagcgccttctaacctcgccctctatctgatcatctcttta
agcgtggtgtcactcatcttcctggtagccataatcgtactggcagctctgaagtgctac
aaagaccgggattgtcctggaggtttcagcatgtcctttatcggtgcttcgtgctgcagt
ctcgaatccgagccggtacccgaatcgtgcaaaaagtccaacctgaatctgcagatatcc
accgggacgaaggtgcccacgaactgtgtagagagcagtaccggaaccacatctcagaac
tactgctacaaggtgtgtctgacacctgaatcagccaagagtgacttcatgttcatgaag
tcctacagcccgaacacgccgagaaacaacgctgctaaggaggctgaaaatctggcgtgg
agctcacgcggtccttcggcgaataacggtgcaacaacccctaacgagttaaaacaagac
aatactaactgggctcttaacaagaaccaaacttcaactttgaaaagttataactcaatc
aatatggatggcaccatcatgaggaaggtcatgcatactgattctgagaactatgtaagt
ccagtggctgcaggacagtactggacatggggatcacgaatgagagagtgcaagaagtct
tctcctgcgacaggcgtccctgagagagcatggacaccccgctacacccctacaaaaaaa
actccccaacaacagcagccttcaggtcaatcacaaggtcaaccgccacctgactaccaa
cacaatgtctacattcctgggactacatctgcactctgtaccctgcggcccactaatcgc
agtgagctagatgtccacaacaccttctcaacctttggaaagaagcgcaagttcatctct
cccggcagttatgacccgagggttgaaataggtactgaggtcatcaataatgacctttat
aatgaatag
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