Silurus meridionalis (southern catfish): 124392914
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Entry
124392914 CDS
T08004
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124392914 (lingo1a)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
124392914 (lingo1a)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRRNT
Ig_C17orf99
V-set
Motif
Other DBs
NCBI-GeneID:
124392914
NCBI-ProteinID:
XP_046716148
LinkDB
All DBs
Position
10:800680..927071
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AA seq
615 aa
AA seq
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MVAVEISGHSYLVACWQPILILMLATVLSGSTTGCPSRCECNGQDRAVVCHRKKLMSVPE
GIPSETRFLDLSKNRIKTINPEEFSGFPSLEELELNENTISTIEPGAFNNLYSLRTLGLR
SNKLKLIQLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLTLEKCNLTFVPTEAFAHLHSLNTLCLRNLNINIIRDYSFKRLSRLKVLEIA
NWPYLDTMTTNCLYGLNLTSLTITNANLTSIPYVALRHLVYLRFLNMSYNPIVIIEGNKL
HDLLRLQEFHLVGCRLAMIEPYSFRGLNYLKILNVSGNSLTTLEESAFHSVGNLETLVLY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDILQPNYFTCRKSRIR
DRKAQQTYVDEGTTVHFTCQADGDPAPVIMWLSPQKHFITPKTIGRLTMFADGTLEVRYA
QIQDNGTYICIASNAGGNDTAVAHLHVHSYSPDWPNQPNKTFAFISNQPSDIGANGTKAT
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGLS
SGTADAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggtggagataagtgggcacagctacctggtggcatgctggcagcccatccta
attctaatgcttgccactgtgctgtccggctcgaccacaggctgcccgtcccgctgcgag
tgcaatggccaggaccgcgccgtcgtgtgccaccgtaaaaagctgatgtcagttcctgag
ggtattccgtctgagacaagattcctagacctcagtaagaaccgtattaaaactattaac
ccagaggagttctctggatttcccagcttggaggagctggaattgaacgagaacaccata
tccaccatcgaacctggggcctttaacaacctgtacagcttaaggactctcgggctgcgc
agcaacaaactcaaactcattcagctaggggtgttcaccggcctcagtaacctcaccaag
ctcgatatcagtgagaataaaatagttatcctgctagactatatgttccaggatctctat
aatctacgctccctggaagtgggcgacaacgacctggtgtttatatcccaccgagctttc
catggcctcagtagtctggagcacctgaccctggagaagtgcaacctgacctttgttcct
acagaggcctttgcccatttgcacagcctcaacactttgtgtctgcgcaacctcaacatt
aacatcatccgagattattccttcaaacgcctttcacgtctgaaagtcctggagatcgct
aattggccgtatctagacacgatgactactaactgcttgtacggtttgaatctcacttcc
ttaacgatcacaaatgcgaatttaacttcgatcccgtacgtggcacttcggcacctggtt
tacctgcgattcttaaacatgtcttacaaccccattgtaatcattgagggcaataaactc
cacgaccttctcagactacaggagtttcacttggttggttgtagactggctatgatagag
ccttactcgttcagagggctcaattatctaaaaatcctgaacgtgtcagggaattctcta
actaccttggaagaatcggctttccactcagtggggaacctggagaccctggtgctttat
gacaaccctctggcatgtgactgcaggcttctctgggtgttccgtcgcagatggagactg
aacttcaaccgccaacagcccacgtgcgcctcacctgagttcgtccagggaaaagagttc
aaagatttccccgacatcttacagcctaattacttcacatgccgcaaatcgagaatccgt
gaccgcaaagcacagcagacgtacgtagatgaggggaccactgtgcattttacctgccag
gcagacggcgatccagcgccagttatcatgtggctttccccacaaaagcacttcatcacc
ccaaaaacgataggaaggcttaccatgtttgctgacggtactttagaggtgcgctacgct
caaatccaagacaatgggacatacatttgtatcgcaagtaacgccgggggaaatgacact
gcagttgctcaccttcacgtccacagctactcccccgactggcccaaccagcccaacaaa
acctttgctttcatttctaaccagcccagtgacattggagccaatgggacaaaggctacg
gtccctttccctttcgacatcaagacactcattatcgccaccaccatgggcttcatctcc
ttcctcggcgtagtattattctgtttggtgctgctgtttctgtggagccgagggaaagga
aacaccaagcacaatatcgagatcgagtacgtcccacgcaaatcagatgcaggacttagc
agcgggacggctgacgcacctcgcaaattcaacatgaaaatgatttaa
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